A9PHT2 (A9PHT2_POPTR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Predicted protein EMBL EEE81529.1

Gene names

ORF Names:

POPTRDRAFT_830202 EMBL EEE81529.1

Organism

Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Complete proteome] EMBL ABK95935.1

Taxonomic identifier

3694 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length	168 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: InterPro
Cellular component	ribosome Inferred from electronic annotation. Source: InterPro
Molecular function	RNA binding Inferred from electronic annotation. Source: InterPro structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A9PHT2 [UniParc]. Last modified February 5, 2008. Version 1. Checksum: 79CA1B8C421658AE	FASTA	168	18,698
	10 20 30 40 50 60 MAQTLAMPVV PSLSAICNGL KSTSLSNSIS LPISNPPKAG SLSIRCARVG GVEIPNSKRV 70 80 90 100 110 120 EYSLQYIHGI GRSNARQILS DLSMENKITK DLSEEELIIL RDEVSKYTIE GDLRRFNALN 130 140 150 160 IRRLKEIQCY RGIRHIQGLP CRGQRTKNNC RTLKGKRVSI PGKKKAPR

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding." Ralph S.G., Chun H.J., Cooper D., Kirkpatrick R., Kolosova N., Gunter L., Tuskan G.A., Douglas C.J., Holt R.A., Jones S.J., Marra M.A., Bohlmann J. BMC Genomics 9:57-57(2008) [PubMed: 18230180] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Tissue: Young and mature leaves EMBL ABK95935.1.
[2]	"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)." Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S. Science 313:1596-1604(2006) [PubMed: 16973872] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nisqually.
[3]	US DOE Joint Genome Institute (JGI-PGF) Grigoriev I.V., Terry A., Salamov A.A., Otillar R., Lou Y., Lucas S., Hammon N., Glavina del Rio T., Detter J., Kalin E., Tice H., Pitluck S., Chapman J., Putnam N.H., Brunner A., Busov V., Campbell M., Chalot M. , Covert S., Davis J., DiFazio S., Gribskov M., Gunter L., Hamberger B., Jansson S., Joshi C., Larimer F., Martin F., Napoli C., Nelson D., Ralph S., Rombauts S., Rouze P., Schrader J., Tsai C., Vahala J., Tuskan G., Rokhsar D. Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases
EMBL GenBank DDBJ	EF147938 mRNA. Translation: ABK95935.1. CM000338 Genomic DNA. Translation: EEE81529.1.
RefSeq	XP_002302256.1. XM_002302220.1.
UniGene	Pth.247.
3D structure databases
ProteinModelPortal	A9PHT2.
SMR	A9PHT2. Positions 48-155.
ModBase	Search...
Protein-protein interaction databases
STRING	A9PHT2.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	POPTR_0002s08900.1; POPTR_0002s08900.1; POPTR_0002s08900.
GeneID	7495117.
KEGG	pop:POPTR_830202.
Phylogenomic databases
GeneTree	EPGT00050000009188.
OMA	YRGRRHR.
PhylomeDB	A9PHT2.
ProtClustDB	CLSN2689668.
Family and domain databases
InterPro	IPR001892. Ribosomal_S13. IPR010979. Ribosomal_S13-like_H2TH. IPR019980. Ribosomal_S13_bac-type. IPR018269. Ribosomal_S13_CS. [Graphical view]
KO	K02952.
PANTHER	PTHR10871. PTHR10871. 1 hit.
Pfam	PF00416. Ribosomal_S13. 1 hit. [Graphical view]
SUPFAM	SSF46946. Ribosomal_H2TH. 1 hit.
TIGRFAMs	TIGR03631. Bact_S13. 1 hit.
PROSITE	PS00646. RIBOSOMAL_S13_1. 1 hit. PS50159. RIBOSOMAL_S13_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A9PHT2_POPTR

Accession

Primary (citable) accession number: A9PHT2

Entry history

Integrated into UniProtKB/TrEMBL:	February 5, 2008
Last sequence update:	February 5, 2008
Last modified:	December 14, 2011
This is version 24 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)