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A9PHQ1

- A9PHQ1_POPTR

UniProt

A9PHQ1 - A9PHQ1_POPTR

Protein

Ribulose bisphosphate carboxylase small chain

Gene

POPTR_0005s15660g

Organism
Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
Status
Unreviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 53 (01 Oct 2014)
      Sequence version 1 (05 Feb 2008)
      Previous versions | rss
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    Functioni

    RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.UniRule annotationSAAS annotation

    Catalytic activityi

    2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O.UniRule annotationSAAS annotation
    3-phospho-D-glycerate + 2-phosphoglycolate = D-ribulose 1,5-bisphosphate + O2.UniRule annotationSAAS annotation

    GO - Molecular functioni

    1. monooxygenase activity Source: UniProtKB-KW
    2. ribulose-bisphosphate carboxylase activity Source: UniProtKB-EC

    GO - Biological processi

    1. carbon fixation Source: UniProtKB-KW
    2. photorespiration Source: UniProtKB-KW
    3. photosynthesis Source: UniProtKB-KW
    4. response to blue light Source: EnsemblPlants/Gramene
    5. response to far red light Source: EnsemblPlants/Gramene
    6. response to red light Source: EnsemblPlants/Gramene

    Keywords - Molecular functioni

    LyaseUniRule annotationSAAS annotation, MonooxygenaseUniRule annotationSAAS annotation, Oxidoreductase

    Keywords - Biological processi

    Carbon dioxide fixationUniRule annotationSAAS annotation, PhotorespirationUniRule annotationSAAS annotation, PhotosynthesisUniRule annotationSAAS annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Ribulose bisphosphate carboxylase small chainUniRule annotation (EC:4.1.1.39UniRule annotation)
    Gene namesi
    ORF Names:POPTR_0005s15660gImported
    OrganismiPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)Imported
    Taxonomic identifieri3694 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesSalicaceaeSaliceaePopulus
    ProteomesiUP000006729: Miscellaneous, Linkage group LGV, whole genome shotgun sequence., UP000006729: Unassembled WGS sequence

    Subcellular locationi

    GO - Cellular componenti

    1. apoplast Source: EnsemblPlants/Gramene
    2. chloroplast envelope Source: EnsemblPlants/Gramene
    3. chloroplast stroma Source: EnsemblPlants/Gramene
    4. cytosolic ribosome Source: EnsemblPlants/Gramene
    5. membrane Source: EnsemblPlants/Gramene
    6. thylakoid Source: EnsemblPlants/Gramene

    Keywords - Cellular componenti

    ChloroplastSAAS annotation, Plastid

    Interactioni

    Subunit structurei

    8 large chains + 8 small chains.UniRule annotationSAAS annotation

    Protein-protein interaction databases

    STRINGi3694.eugene3.01230087.

    Structurei

    3D structure databases

    SMRiA9PHQ1. Positions 59-180.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the RuBisCO small chain family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG4451.
    HOGENOMiHOG000141332.
    KOiK01602.
    OMAiAFPATRK.

    Family and domain databases

    Gene3Di3.30.190.10. 1 hit.
    InterProiIPR024681. RuBisCO_sc.
    IPR000894. RuBisCO_sc_dom.
    IPR024680. RuBisCO_ssu_N.
    [Graphical view]
    PfamiPF12338. RbcS. 1 hit.
    PF00101. RuBisCO_small. 1 hit.
    [Graphical view]
    PRINTSiPR00152. RUBISCOSMALL.
    SUPFAMiSSF55239. SSF55239. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    A9PHQ1-1 [UniParc]FASTAAdd to Basket

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    MASSVISSAA VATVNRTPAQ ANMVAPFNGL KSTSAFPVTR KANNDITSIA    50
    SNGGRVQCMQ VWPPTGLKKF ETLSYLPDLT TEQLAQEIEY LLRNKWVPCL 100
    EFELEKGWVY REHHQSPGYY DGRYWTMWKL PMFGCTEASQ VLIELEEAKK 150
    AYPNSFIRII GFDNTRQVQC ISFIASKPKG V 181
    Length:181
    Mass (Da):20,390
    Last modified:February 5, 2008 - v1
    Checksum:i1DC0C95A8E5FD94D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    EF147906 mRNA. Translation: ABK95904.1.
    EF148201 mRNA. Translation: ABK96181.1.
    CM000341 Genomic DNA. Translation: ERP61253.1.
    RefSeqiXP_006383456.1. XM_006383394.1.
    UniGeneiPth.3709.

    Genome annotation databases

    EnsemblPlantsiPOPTR_0005s15660.1; POPTR_0005s15660.1; POPTR_0005s15660.
    GeneIDi18099496.
    KEGGipop:POPTR_0005s15660g.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    EF147906 mRNA. Translation: ABK95904.1 .
    EF148201 mRNA. Translation: ABK96181.1 .
    CM000341 Genomic DNA. Translation: ERP61253.1 .
    RefSeqi XP_006383456.1. XM_006383394.1.
    UniGenei Pth.3709.

    3D structure databases

    SMRi A9PHQ1. Positions 59-180.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 3694.eugene3.01230087.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi POPTR_0005s15660.1 ; POPTR_0005s15660.1 ; POPTR_0005s15660 .
    GeneIDi 18099496.
    KEGGi pop:POPTR_0005s15660g.

    Phylogenomic databases

    eggNOGi COG4451.
    HOGENOMi HOG000141332.
    KOi K01602.
    OMAi AFPATRK.

    Family and domain databases

    Gene3Di 3.30.190.10. 1 hit.
    InterProi IPR024681. RuBisCO_sc.
    IPR000894. RuBisCO_sc_dom.
    IPR024680. RuBisCO_ssu_N.
    [Graphical view ]
    Pfami PF12338. RbcS. 1 hit.
    PF00101. RuBisCO_small. 1 hit.
    [Graphical view ]
    PRINTSi PR00152. RUBISCOSMALL.
    SUPFAMi SSF55239. SSF55239. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
      Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A.
      , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
      Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. NisquallyImported.
    2. "Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding."
      Ralph S.G., Chun H.J., Cooper D., Kirkpatrick R., Kolosova N., Gunter L., Tuskan G.A., Douglas C.J., Holt R.A., Jones S.J., Marra M.A., Bohlmann J.
      BMC Genomics 9:57-57(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Tissue: Young and mature leavesImported.
    3. Cited for: GENOME REANNOTATION.
      Strain: cv. NisquallyImported.
    4. Cited for: NUCLEOTIDE SEQUENCE.

    Entry informationi

    Entry nameiA9PHQ1_POPTR
    AccessioniPrimary (citable) accession number: A9PHQ1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 5, 2008
    Last sequence update: February 5, 2008
    Last modified: October 1, 2014
    This is version 53 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3