Skip Header

Contribute Send feedback
Read comments (0) or add your own

Unreviewed, UniProtKB/TrEMBL A9PGN5 (A9PGN5_POPTR)

Last modified July 13, 2010. Version 14. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · Sequences · References · Cross-references · Entry information
Hide | Top

Names and originHide

Protein namesSubmitted name:
Predicted protein EMBL EEE82822.1
Submitted name:
Putative uncharacterized protein EMBL ABK95538.1
Gene names
ORF Names:POPTRDRAFT_548430 EMBL EEE82822.1
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) EMBL ABK95538.1
Taxonomic identifier3694 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus
Hide | Top

Protein attributesHide

Sequence length518 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level.
Hide | Top

SequencesHide

Sequence LengthMass (Da)Tools
A9PGN5-1 [UniParc].

Last modified February 5, 2008. Version 1.
Checksum: 622BC60701546398

FASTA51859,781
        10         20         30         40         50         60 
MKVNTQKDPD KIIWDQMRSP SSTLISGSQN RTLPKLMVWL ILFVSVTYVV YTLKLVSTSR 

        70         80         90        100        110        120 
ACNNEPFTTN RHLSSISNNN SLPLIRNHTS LAIPRRENQE PRLETGFQHI VFGIAASAKL 

       130        140        150        160        170        180 
WEQRKNYIKI WYKPQEMRGI VWLDDKVKNQ EREDSNLPPI KISRDTSRFS YTNKQGHRSA 

       190        200        210        220        230        240 
IRISRIVSET LRLGLKNVRW FVMGDDDTFF IAENLVRILR KYDHNQYYYI GSLSESHLQN 

       250        260        270        280        290        300 
IFFSYGMAYG GGGFAISYPL AKALDKMQDR CIQRYPGLYG SDDRMQACMA ELGVPLTKEV 

       310        320        330        340        350        360 
GFHQYDVYGN LFGLLASHPV TPLVSLHHLD VVEPIFPNAT RVEALRWLTV PMKLDSAGLM 

       370        380        390        400        410        420 
QQSICYDKSK RWTISVSWGF AVQIFRGVFS PREIEMPSRT FLNWYRKADY TAYAFNTRPV 

       430        440        450        460        470        480 
SRNPCQKPFV FYLLKAKFDS SLNTTVSEYG RHHVPHPACK WKMADPDKIE TIVVHKKPDP 

       490        500        510 
HLWNRSPRRN CCQVMNSKKK GSVMVNVGVC RDGEISEV

« Hide

Hide | Top

ReferencesHide

[1]"Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding."
Ralph S.G., Chun H.J., Cooper D., Kirkpatrick R., Kolosova N., Gunter L., Tuskan G.A., Douglas C.J., Holt R.A., Jones S.J., Marra M.A., Bohlmann J.
BMC Genomics 9:57-57(2008) [PubMed: 18230180] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Tissue: Young and mature leaves EMBL ABK95538.1.
[2]"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. expand/collapse author list , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
Science 313:1596-1604(2006) [PubMed: 16973872] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[3]US DOE Joint Genome Institute (JGI-PGF)
Grigoriev I.V., Terry A., Salamov A.A., Otillar R., Lou Y., Lucas S., Hammon N., Glavina del Rio T., Detter J., Kalin E., Tice H., Pitluck S., Chapman J., Putnam N.H., Brunner A., Busov V., Campbell M., Chalot M. expand/collapse author list , Covert S., Davis J., DiFazio S., Gribskov M., Gunter L., Hamberger B., Jansson S., Joshi C., Larimer F., Martin F., Napoli C., Nelson D., Ralph S., Rombauts S., Rouze P., Schrader J., Tsai C., Vahala J., Tuskan G., Rokhsar D.
Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Hide | Top

Cross-referencesHide

Sequence databases

EMBL
GenBank
DDBJ		EF147525 mRNA. Translation: ABK95538.1.
CM000337 Genomic DNA. Translation: EEE82822.1.
RefSeqXP_002298017.1.

3D structure databases

SMRA9PGN5. Positions 107-345.
ModBaseSearch...

Protein family/group databases

CAZyGT31. Glycosyltransferase Family 31.

Genome annotation databases

EnsemblPlantseugene3.00010871; eugene3.00010871; eugene3.00010871.
GeneID7479297.
KEGGpop:POPTR_548430.

Phylogenomic databases

OMAIPRRENQ.
ProtClustDBCLSN2686370.

Family and domain databases

InterProIPR006740. DUF604.
[Graphical view]
PfamPF04646. DUF604. 1 hit.
[Graphical view]
ProtoNetSearch...
Hide | Top

Entry informationHide

Entry nameA9PGN5_POPTR
AccessionPrimary (citable) accession number: A9PGN5
Entry history
Integrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: July 13, 2010
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
Names and origin · Protein attributes · Sequences · References · Cross-references · Entry information