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A9PGB4

- A9PGB4_POPTR

UniProt

A9PGB4 - A9PGB4_POPTR

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Protein
Submitted name:

Uncharacterized protein

Gene

POPTR_0010s03960g

Organism
Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
ORF Names:POPTR_0010s03960gImported
OrganismiPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)Imported
Taxonomic identifieri3694 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesSalicaceaeSaliceaePopulus
ProteomesiUP000006729: Unassembled WGS sequence

Interactioni

Protein-protein interaction databases

STRINGi3694.eugene3.02130017.

Structurei

3D structure databases

ProteinModelPortaliA9PGB4.
SMRiA9PGB4. Positions 4-219.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the GST superfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0625.
HOGENOMiHOG000125749.
InParanoidiA9PGB4.
KOiK00799.
OMAiFAGETDE.

Family and domain databases

Gene3Di1.20.1050.10. 1 hit.
3.40.30.10. 1 hit.
InterProiIPR010987. Glutathione-S-Trfase_C-like.
IPR004045. Glutathione_S-Trfase_N.
IPR004046. GST_C.
IPR012336. Thioredoxin-like_fold.
[Graphical view]
PfamiPF00043. GST_C. 1 hit.
PF13417. GST_N_3. 1 hit.
[Graphical view]
SUPFAMiSSF47616. SSF47616. 1 hit.
SSF52833. SSF52833. 1 hit.
PROSITEiPS50405. GST_CTER. 1 hit.
PS50404. GST_NTER. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A9PGB4-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAKSDVKLIG AWPSPFVMRP RIALNIKSAG YEFLEETLGS KSQLLLESNP
60 70 80 90 100
VHKKIPVLIH DGKPICESLV IVEYIDEVWS SGPTILPSDP YDRALARFWA
110 120 130 140 150
AYLDEKWFPT MRSIATAKEE EARKALIEQA GEGVMMLEDA FSRCSKGKGF
160 170 180 190 200
FGGDQIGYLD IAFGSFLGWL RAIEKMNGVK LIDETKTPSL LKWATSFSSH
210 220 230
PAVKDVLPET QKLVEFAKVL AKFKAPSSNS
Length:230
Mass (Da):25,557
Last modified:February 5, 2008 - v1
Checksum:i30C5AA5F083F6436
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EF147404 mRNA. Translation: ABK95417.1.
CM000346 Genomic DNA. Translation: ERP55940.1.
RefSeqiXP_006378143.1. XM_006378081.1.
UniGeneiPth.3695.

Genome annotation databases

EnsemblPlantsiPOPTR_0010s03960.1; POPTR_0010s03960.1; POPTR_0010s03960.
GeneIDi18102327.
KEGGipop:POPTR_0010s03960g.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EF147404 mRNA. Translation: ABK95417.1 .
CM000346 Genomic DNA. Translation: ERP55940.1 .
RefSeqi XP_006378143.1. XM_006378081.1.
UniGenei Pth.3695.

3D structure databases

ProteinModelPortali A9PGB4.
SMRi A9PGB4. Positions 4-219.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 3694.eugene3.02130017.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi POPTR_0010s03960.1 ; POPTR_0010s03960.1 ; POPTR_0010s03960 .
GeneIDi 18102327.
KEGGi pop:POPTR_0010s03960g.

Phylogenomic databases

eggNOGi COG0625.
HOGENOMi HOG000125749.
InParanoidi A9PGB4.
KOi K00799.
OMAi FAGETDE.

Family and domain databases

Gene3Di 1.20.1050.10. 1 hit.
3.40.30.10. 1 hit.
InterProi IPR010987. Glutathione-S-Trfase_C-like.
IPR004045. Glutathione_S-Trfase_N.
IPR004046. GST_C.
IPR012336. Thioredoxin-like_fold.
[Graphical view ]
Pfami PF00043. GST_C. 1 hit.
PF13417. GST_N_3. 1 hit.
[Graphical view ]
SUPFAMi SSF47616. SSF47616. 1 hit.
SSF52833. SSF52833. 1 hit.
PROSITEi PS50405. GST_CTER. 1 hit.
PS50404. GST_NTER. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
    Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A.
    , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
    Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. NisquallyImported.
  2. "Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding."
    Ralph S.G., Chun H.J., Cooper D., Kirkpatrick R., Kolosova N., Gunter L., Tuskan G.A., Douglas C.J., Holt R.A., Jones S.J., Marra M.A., Bohlmann J.
    BMC Genomics 9:57-57(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: Young and mature leavesImported.
  3. Cited for: GENOME REANNOTATION.
    Strain: cv. NisquallyImported.
  4. Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiA9PGB4_POPTR
AccessioniPrimary (citable) accession number: A9PGB4
Entry historyi
Integrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: October 29, 2014
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3