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A9PGB4 (A9PGB4_POPTR) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 38. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length230 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the GST superfamily. RuleBase RU003494

Contains 1 GST C-terminal domain.

Contains 1 GST N-terminal domain. SAAS SAAS004045

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processde-etiolation

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

glutathione metabolic process

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

lateral root development

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

response to cadmium ion

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

response to growth hormone stimulus

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

response to karrikin

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

   Cellular_componentchloroplast

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A9PGB4 [UniParc].

Last modified February 5, 2008. Version 1.
Checksum: 30C5AA5F083F6436

FASTA23025,557
        10         20         30         40         50         60 
MAKSDVKLIG AWPSPFVMRP RIALNIKSAG YEFLEETLGS KSQLLLESNP VHKKIPVLIH 

        70         80         90        100        110        120 
DGKPICESLV IVEYIDEVWS SGPTILPSDP YDRALARFWA AYLDEKWFPT MRSIATAKEE 

       130        140        150        160        170        180 
EARKALIEQA GEGVMMLEDA FSRCSKGKGF FGGDQIGYLD IAFGSFLGWL RAIEKMNGVK 

       190        200        210        220        230 
LIDETKTPSL LKWATSFSSH PAVKDVLPET QKLVEFAKVL AKFKAPSSNS

« Hide

References

« Hide 'large scale' references
[1]"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. expand/collapse author list , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nisqually.
[2]"Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding."
Ralph S.G., Chun H.J., Cooper D., Kirkpatrick R., Kolosova N., Gunter L., Tuskan G.A., Douglas C.J., Holt R.A., Jones S.J., Marra M.A., Bohlmann J.
BMC Genomics 9:57-57(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Tissue: Young and mature leaves EMBL ABK95417.1.
[3]US DOE Joint Genome Institute (JGI-PGF)
Grigoriev I.V., Terry A., Salamov A.A., Otillar R., Lou Y., Lucas S., Hammon N., Glavina del Rio T., Detter J., Kalin E., Tice H., Pitluck S., Chapman J., Putnam N.H., Brunner A., Busov V., Campbell M., Chalot M. expand/collapse author list , Covert S., Davis J., DiFazio S., Gribskov M., Gunter L., Hamberger B., Jansson S., Joshi C., Larimer F., Martin F., Napoli C., Nelson D., Ralph S., Rombauts S., Rouze P., Schrader J., Tsai C., Vahala J., Tuskan G., Rokhsar D.
Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Nisqually.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		EF147404 mRNA. Translation: ABK95417.1.
DS017366 Genomic DNA. Translation: EEE70626.1.
RefSeqXP_002332367.1. XM_002332330.1.
UniGenePth.3695.

3D structure databases

SMRA9PGB4. Positions 4-219.
ModBaseSearch...

Protein-protein interaction databases

STRING3694.eugene3.02130017.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsPOPTR_0010s03960.1; POPTR_0010s03960.1; POPTR_0010s03960.
GeneID7495908.
KEGGpop:POPTR_587490.

Phylogenomic databases

eggNOGCOG0625.
HOGENOMHOG000125749.
KOK00799.
OMALYERETW.
ProtClustDBCLSN2679578.

Gene expression databases

ArrayExpressA9PGB4.

Family and domain databases

Gene3D1.20.1050.10. 1 hit.
3.40.30.10. 1 hit.
InterProIPR010987. Glutathione-S-Trfase_C-like.
IPR004045. Glutathione_S-Trfase_N.
IPR017933. Glutathione_S_Trfase/Cl_chnl_C.
IPR004046. GST_C.
IPR012336. Thioredoxin-like_fold.
[Graphical view]
PfamPF00043. GST_C. 1 hit.
[Graphical view]
SUPFAMSSF47616. GST_C_like. 1 hit.
SSF52833. Thiordxn-like_fd. 1 hit.
PROSITEPS50405. GST_CTER. 1 hit.
PS50404. GST_NTER. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA9PGB4_POPTR
AccessionPrimary (citable) accession number: A9PGB4
Entry history
Integrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: May 1, 2013
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info