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A9PGB4

- A9PGB4_POPTR

UniProt

A9PGB4 - A9PGB4_POPTR

Protein
Submitted name:

Uncharacterized protein

Gene

POPTR_0010s03960g

Organism
Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 52 (01 Oct 2014)
      Sequence version 1 (05 Feb 2008)
      Previous versions | rss
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    Functioni

    GO - Biological processi

    1. de-etiolation Source: EnsemblPlants/Gramene
    2. glutathione metabolic process Source: EnsemblPlants/Gramene
    3. lateral root development Source: EnsemblPlants/Gramene
    4. negative regulation of response to water deprivation Source: EnsemblPlants/Gramene
    5. response to growth hormone Source: EnsemblPlants/Gramene
    6. response to karrikin Source: EnsemblPlants/Gramene
    7. response to salt stress Source: EnsemblPlants/Gramene

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Uncharacterized proteinImported
    Gene namesi
    ORF Names:POPTR_0010s03960gImported
    OrganismiPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)Imported
    Taxonomic identifieri3694 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesSalicaceaeSaliceaePopulus
    ProteomesiUP000006729: Unassembled WGS sequence

    Subcellular locationi

    GO - Cellular componenti

    1. chloroplast Source: EnsemblPlants/Gramene

    Interactioni

    Protein-protein interaction databases

    STRINGi3694.eugene3.02130017.

    Structurei

    3D structure databases

    SMRiA9PGB4. Positions 4-219.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the GST superfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0625.
    HOGENOMiHOG000125749.
    KOiK00799.
    OMAiFAGETDE.

    Family and domain databases

    Gene3Di1.20.1050.10. 1 hit.
    3.40.30.10. 1 hit.
    InterProiIPR010987. Glutathione-S-Trfase_C-like.
    IPR004045. Glutathione_S-Trfase_N.
    IPR004046. GST_C.
    IPR012336. Thioredoxin-like_fold.
    [Graphical view]
    PfamiPF00043. GST_C. 1 hit.
    PF13417. GST_N_3. 1 hit.
    [Graphical view]
    SUPFAMiSSF47616. SSF47616. 1 hit.
    SSF52833. SSF52833. 1 hit.
    PROSITEiPS50405. GST_CTER. 1 hit.
    PS50404. GST_NTER. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A9PGB4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAKSDVKLIG AWPSPFVMRP RIALNIKSAG YEFLEETLGS KSQLLLESNP    50
    VHKKIPVLIH DGKPICESLV IVEYIDEVWS SGPTILPSDP YDRALARFWA 100
    AYLDEKWFPT MRSIATAKEE EARKALIEQA GEGVMMLEDA FSRCSKGKGF 150
    FGGDQIGYLD IAFGSFLGWL RAIEKMNGVK LIDETKTPSL LKWATSFSSH 200
    PAVKDVLPET QKLVEFAKVL AKFKAPSSNS 230
    Length:230
    Mass (Da):25,557
    Last modified:February 5, 2008 - v1
    Checksum:i30C5AA5F083F6436
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    EF147404 mRNA. Translation: ABK95417.1.
    CM000346 Genomic DNA. Translation: ERP55940.1.
    RefSeqiXP_006378143.1. XM_006378081.1.
    UniGeneiPth.3695.

    Genome annotation databases

    EnsemblPlantsiPOPTR_0010s03960.1; POPTR_0010s03960.1; POPTR_0010s03960.
    GeneIDi18102327.
    KEGGipop:POPTR_0010s03960g.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    EF147404 mRNA. Translation: ABK95417.1 .
    CM000346 Genomic DNA. Translation: ERP55940.1 .
    RefSeqi XP_006378143.1. XM_006378081.1.
    UniGenei Pth.3695.

    3D structure databases

    SMRi A9PGB4. Positions 4-219.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 3694.eugene3.02130017.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi POPTR_0010s03960.1 ; POPTR_0010s03960.1 ; POPTR_0010s03960 .
    GeneIDi 18102327.
    KEGGi pop:POPTR_0010s03960g.

    Phylogenomic databases

    eggNOGi COG0625.
    HOGENOMi HOG000125749.
    KOi K00799.
    OMAi FAGETDE.

    Family and domain databases

    Gene3Di 1.20.1050.10. 1 hit.
    3.40.30.10. 1 hit.
    InterProi IPR010987. Glutathione-S-Trfase_C-like.
    IPR004045. Glutathione_S-Trfase_N.
    IPR004046. GST_C.
    IPR012336. Thioredoxin-like_fold.
    [Graphical view ]
    Pfami PF00043. GST_C. 1 hit.
    PF13417. GST_N_3. 1 hit.
    [Graphical view ]
    SUPFAMi SSF47616. SSF47616. 1 hit.
    SSF52833. SSF52833. 1 hit.
    PROSITEi PS50405. GST_CTER. 1 hit.
    PS50404. GST_NTER. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
      Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A.
      , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
      Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. NisquallyImported.
    2. "Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding."
      Ralph S.G., Chun H.J., Cooper D., Kirkpatrick R., Kolosova N., Gunter L., Tuskan G.A., Douglas C.J., Holt R.A., Jones S.J., Marra M.A., Bohlmann J.
      BMC Genomics 9:57-57(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Tissue: Young and mature leavesImported.
    3. Cited for: GENOME REANNOTATION.
      Strain: cv. NisquallyImported.
    4. Cited for: NUCLEOTIDE SEQUENCE.

    Entry informationi

    Entry nameiA9PGB4_POPTR
    AccessioniPrimary (citable) accession number: A9PGB4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 5, 2008
    Last sequence update: February 5, 2008
    Last modified: October 1, 2014
    This is version 52 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3