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A9PEJ0 (A9PEJ0_POPTR) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 43. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Predicted protein EMBL EEE79032.1
Gene names
ORF Names:POPTRDRAFT_1122005 EMBL EEF06656.1, POPTRDRAFT_645629 EMBL EEE79032.1
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Reference proteome] EMBL ABK94793.1
Taxonomic identifier3694 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length149 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Contains 1 2Fe-2S ferredoxin-type domain. RuleBase RU000392

Sequences

Sequence LengthMass (Da)Tools
A9PEJ0 [UniParc].

Last modified February 5, 2008. Version 1.
Checksum: ED07C323C980EC55

FASTA14915,719
        10         20         30         40         50         60 
MATAAALSTS AMVSTSFAKQ KPVTSLRALP AVGEALFGLK ASRGGRAKAM AAHKVKLITP 

        70         80         90        100        110        120 
DGEEEFDCPT NVYILDHAEE AHGMDLPYSC RAGACSSCAG KVVQGTVDQS DGSFLDEDQI 

       130        140 
AEGWVLTCVA YPTSDVVIET HKEEEFSAF

« Hide

References

« Hide 'large scale' references
[1]"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. expand/collapse author list , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nisqually.
[2]"Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding."
Ralph S.G., Chun H.J., Cooper D., Kirkpatrick R., Kolosova N., Gunter L., Tuskan G.A., Douglas C.J., Holt R.A., Jones S.J., Marra M.A., Bohlmann J.
BMC Genomics 9:57-57(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Tissue: Young and mature leaves EMBL ABK94793.1.
[3]US DOE Joint Genome Institute (JGI-PGF)
Grigoriev I.V., Terry A., Salamov A.A., Otillar R., Lou Y., Lucas S., Hammon N., Glavina del Rio T., Detter J., Kalin E., Tice H., Pitluck S., Chapman J., Putnam N.H., Brunner A., Busov V., Campbell M., Chalot M. expand/collapse author list , Covert S., Davis J., DiFazio S., Gribskov M., Gunter L., Hamberger B., Jansson S., Joshi C., Larimer F., Martin F., Napoli C., Nelson D., Ralph S., Rombauts S., Rouze P., Schrader J., Tsai C., Vahala J., Tuskan G., Rokhsar D.
Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Nisqually.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		EF146744 mRNA. Translation: ABK94793.1.
EF147195 mRNA. Translation: ABK95222.1.
CM000339 Genomic DNA. Translation: EEE79032.1.
EQ139679 Genomic DNA. Translation: EEF06656.1.
RefSeqXP_002304053.1. XM_002304017.1.
XP_002337667.1. XM_002337627.1.
UniGenePth.16424.

3D structure databases

SMRA9PEJ0. Positions 51-148.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsPOPTR_0003s01090.1; POPTR_0003s01090.1; POPTR_0003s01090.
GeneID7454174.
7480754.
KEGGpop:POPTR_1122005.
pop:POPTR_645629.

Phylogenomic databases

eggNOGCOG0633.
HOGENOMHOG000217152.
KOK02639.
OMAAIECADD.
ProtClustDBCLSN2715334.

Family and domain databases

Gene3D3.10.20.30. 1 hit.
InterProIPR001041. 2Fe-2S_ferredoxin-type.
IPR006058. 2Fe2S_fd_BS.
IPR012675. Beta-grasp_dom.
IPR010241. Fd_pln.
[Graphical view]
PfamPF00111. Fer2. 1 hit.
[Graphical view]
SUPFAMSSF54292. Ferredoxin. 1 hit.
TIGRFAMsTIGR02008. fdx_plant. 1 hit.
PROSITEPS00197. 2FE2S_FER_1. 1 hit.
PS51085. 2FE2S_FER_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA9PEJ0_POPTR
AccessionPrimary (citable) accession number: A9PEJ0
Entry history
Integrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: April 3, 2013
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info