A9PE08 (A9PE08_POPTR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Predicted protein EMBL EEE80554.1

Gene names

ORF Names:

POPTRDRAFT_816561 EMBL EEE80554.1

Organism

Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Complete proteome] EMBL ABK94611.1

Taxonomic identifier

3694 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length	151 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: InterPro
Molecular function	structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A9PE08 [UniParc]. Last modified February 5, 2008. Version 1. Checksum: 97829DC3BD6B7ED8	FASTA	151	17,073
	10 20 30 40 50 60 MGRMHSKGKG ISASALPYKR TPPSWLKISP QDVDDNICKF AKKGLTPSQI GVILRDSHGI 70 80 90 100 110 120 AQVKAVTGNQ ILRILKAHGL APEIPEDLYH LIKKAVAIRK HLERNRKDKD SKFRLILVES 130 140 150 RIHRLARYYK KTKKLPPVWK YESSTASTLV A

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding." Ralph S.G., Chun H.J., Cooper D., Kirkpatrick R., Kolosova N., Gunter L., Tuskan G.A., Douglas C.J., Holt R.A., Jones S.J., Marra M.A., Bohlmann J. BMC Genomics 9:57-57(2008) [PubMed: 18230180] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Tissue: Phloem and cambium EMBL ABK94611.1.
[2]	"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)." Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S. Science 313:1596-1604(2006) [PubMed: 16973872] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nisqually.
[3]	US DOE Joint Genome Institute (JGI-PGF) Grigoriev I.V., Terry A., Salamov A.A., Otillar R., Lou Y., Lucas S., Hammon N., Glavina del Rio T., Detter J., Kalin E., Tice H., Pitluck S., Chapman J., Putnam N.H., Brunner A., Busov V., Campbell M., Chalot M. , Covert S., Davis J., DiFazio S., Gribskov M., Gunter L., Hamberger B., Jansson S., Joshi C., Larimer F., Martin F., Napoli C., Nelson D., Ralph S., Rombauts S., Rouze P., Schrader J., Tsai C., Vahala J., Tuskan G., Rokhsar D. Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases
EMBL GenBank DDBJ	EF146546 mRNA. Translation: ABK94611.1. CM000338 Genomic DNA. Translation: EEE80554.1.
RefSeq	XP_002301281.1. XM_002301245.1.
UniGene	Pth.3058.
3D structure databases
ProteinModelPortal	A9PE08.
SMR	A9PE08. Positions 65-148.
ModBase	Search...
Protein-protein interaction databases
STRING	A9PE08.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	POPTR_0002s14780.1; POPTR_0002s14780.1; POPTR_0002s14780.
GeneID	7461714.
KEGG	pop:POPTR_816561.
Phylogenomic databases
GeneTree	EPGT00050000017196.
OMA	XVILRDS.
PhylomeDB	A9PE08.
ProtClustDB	CLSN2689242.
Family and domain databases
HAMAP	MF_01343_A. Ribosomal_S15_S13e_A. [Tree]
InterPro	IPR012606. Ribosomal_S13/S15_N. IPR000589. Ribosomal_S15. IPR023029. Ribosomal_S15P. IPR009068. S15_NS1_RNA-bd. [Graphical view]
KO	K02953.
Pfam	PF08069. Ribosomal_S13_N. 1 hit. PF00312. Ribosomal_S15. 1 hit. [Graphical view]
SUPFAM	SSF47060. S15/NS1_bind. 1 hit.
PROSITE	PS00362. RIBOSOMAL_S15. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A9PE08_POPTR

Accession

Primary (citable) accession number: A9PE08

Entry history

Integrated into UniProtKB/TrEMBL:	February 5, 2008
Last sequence update:	February 5, 2008
Last modified:	December 14, 2011
This is version 24 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)