A9PBE9 (A9PBE9_POPTR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Predicted protein EMBL EEE99601.1

Gene names

ORF Names:

POPTRDRAFT_665064 EMBL EEE99601.1, POPTRDRAFT_746779 EMBL EEF12506.1

Organism

Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Complete proteome] EMBL ABK93702.1

Taxonomic identifier

3694 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length	133 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: InterPro
Molecular function	structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A9PBE9 [UniParc]. Last modified February 5, 2008. Version 1. Checksum: 160CE8B9F20B3503	FASTA	133	15,644
	10 20 30 40 50 60 MAVPLLTKKI VKKRVKKFKR PQSDRKISVK TNWRRPKGID SRVRRKFKGC TLMPNIGYGS 70 80 90 100 110 120 DKKTRHYLPN GFKKFVVHNV KELEVLMMHN RTYCAEIAHN VSTRKRKEIV ERAAQLDVVV 130 TNKLARLRSQ EDE

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding." Ralph S.G., Chun H.J., Cooper D., Kirkpatrick R., Kolosova N., Gunter L., Tuskan G.A., Douglas C.J., Holt R.A., Jones S.J., Marra M.A., Bohlmann J. BMC Genomics 9:57-57(2008) [PubMed: 18230180] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Tissue: Phloem and cambium EMBL ABK93702.1.
[2]	"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)." Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S. Science 313:1596-1604(2006) [PubMed: 16973872] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nisqually.
[3]	US DOE Joint Genome Institute (JGI-PGF) Grigoriev I.V., Terry A., Salamov A.A., Otillar R., Lou Y., Lucas S., Hammon N., Glavina del Rio T., Detter J., Kalin E., Tice H., Pitluck S., Chapman J., Putnam N.H., Brunner A., Busov V., Campbell M., Chalot M. , Covert S., Davis J., DiFazio S., Gribskov M., Gunter L., Hamberger B., Jansson S., Joshi C., Larimer F., Martin F., Napoli C., Nelson D., Ralph S., Rombauts S., Rouze P., Schrader J., Tsai C., Vahala J., Tuskan G., Rokhsar D. Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases
EMBL GenBank DDBJ	EF145555 mRNA. Translation: ABK93702.1. EF146015 mRNA. Translation: ABK94122.1. CM000350 Genomic DNA. Translation: EEE99601.1. DS017339 Genomic DNA. Translation: EEF12506.1.
RefSeq	XP_002321286.1. XM_002321250.1. XP_002331857.1. XM_002331821.1.
UniGene	Pth.16640. Pth.17031.
3D structure databases
ProteinModelPortal	A9PBE9.
SMR	A9PBE9. Positions 4-122.
ModBase	Search...
Protein-protein interaction databases
STRING	A9PBE9.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	POPTR_0001s34370.1; POPTR_0001s34370.1; POPTR_0001s34370. POPTR_0014s18940.1; POPTR_0014s18940.1; POPTR_0014s18940.
GeneID	7455687. 7470891.
KEGG	pop:POPTR_665064. pop:POPTR_746779.
Phylogenomic databases
GeneTree	EPGT00050000017734.
OMA	FKGQYLM.
PhylomeDB	A9PBE9.
ProtClustDB	CLSN2686030.
Family and domain databases
InterPro	IPR001515. Ribosomal_L32e. [Graphical view]
KO	K02912.
Pfam	PF01655. Ribosomal_L32e. 1 hit. [Graphical view]
ProDom	PD003823. Ribosomal_L32e. 1 hit. [Graphical view] [Entries sharing at least one domain]
SUPFAM	SSF52042. Ribosomal_L32e. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A9PBE9_POPTR

Accession

Primary (citable) accession number: A9PBE9

Entry history

Integrated into UniProtKB/TrEMBL:	February 5, 2008
Last sequence update:	February 5, 2008
Last modified:	December 14, 2011
This is version 25 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)