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A9NBB8

- A9NBB8_COXBR

UniProt

A9NBB8 - A9NBB8_COXBR

Protein
Submitted name:

DNA ligase D

Gene

ligD

Organism
Coxiella burnetii (strain RSA 331 / Henzerling II)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 40 (01 Oct 2014)
      Sequence version 1 (05 Feb 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciCBUR360115:GI0X-2141-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Name:ligDImported
    Ordered Locus Names:COXBURSA331_A2135Imported
    OrganismiCoxiella burnetii (strain RSA 331 / Henzerling II)Imported
    Taxonomic identifieri360115 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaLegionellalesCoxiellaceaeCoxiella
    ProteomesiUP000008557: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi360115.COXBURSA331_A2135.

    Structurei

    3D structure databases

    ProteinModelPortaliA9NBB8.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiDWTIRSI.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A9NBB8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MILLSLKHYR QKRDFTKTSE PQGESASSSQ QFIYVIQKHD ASHLHYDLRL    50
    ELDGVLKSWA VPKGPSLNSD LKRLAVEVED HPIDYATFEG NIPKGQYGAG 100
    PVIVWDKGTW QPEGNAKENL KKGKLVFIIN GEKLKGKWAL VRLKTDDYKN 150
    NWLLIKKKDH YATERFDIDN YPLSVISGAS IEEIKNHKLA LSLSDLKNAK 200
    KTVVPEFIQP QLAKLKTVVP DSPDWIHEIK FDGYRIICII KKGIIQLMTR 250
    NQKNWTEKLA GLAETMKSIP IDESILDGEI VVFDESGKTD FQLLQNAIKA 300
    KKYNEIKYYL FDIPFCQKFD LSQVPLIMRK RLLKKLILQW KEKSGSILYS 350
    SHIKGNGKAI LERACELGLE GIISKKIDAA YEQRRSSSWI KLKCKRQQEF 400
    VIGGYTKPRG EQLYFGALLL GYYQNKKLIY CGRVGTGFSS LSLKDIYEKL 450
    INREQKAPAF SELPTFGIKA GNHWVKPELV AEIEFAEWTK DKRLRQPVFK 500
    GLREDKEAKG VKLETVKKTT VKNKPNNIKL TNPEKILYPE EKITKRQLAD 550
    FYSKIADRLL PHIVHRPLML LRCSNGYNKE CFFQKHPDQN GEEFVYSVEI 600
    EEKERKRYLT IHDEKGLLAL VQMGVLEIHP WGSSDSHPEK PDRLIFDIDP 650
    HPAVSWKAVI NCATDVFEVL KALGLRSFVK TSGGKGLHVY VPIQPQLGWE 700
    KLHEFAQKLA KLIVQVNPRL YTAELSKGKR LNKIFIDYIR NNRGATCVAP 750
    YSTRAKKHVP LSTPVSWDEL SAVKSPTQFT IKNIFHRLEA LNQDPWEEFF 800
    DIKQSITASM WKFFS 815
    Length:815
    Mass (Da):93,698
    Last modified:February 5, 2008 - v1
    Checksum:i6306CB1B740E1282
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000890 Genomic DNA. Translation: ABX77261.1.
    RefSeqiYP_001597749.1. NC_010117.1.

    Genome annotation databases

    EnsemblBacteriaiABX77261; ABX77261; COXBURSA331_A2135.
    GeneIDi5793783.
    KEGGicbs:COXBURSA331_A2135.
    PATRICi17928504. VBICoxBur33747_2109.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000890 Genomic DNA. Translation: ABX77261.1 .
    RefSeqi YP_001597749.1. NC_010117.1.

    3D structure databases

    ProteinModelPortali A9NBB8.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 360115.COXBURSA331_A2135.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABX77261 ; ABX77261 ; COXBURSA331_A2135 .
    GeneIDi 5793783.
    KEGGi cbs:COXBURSA331_A2135.
    PATRICi 17928504. VBICoxBur33747_2109.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi DWTIRSI.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci CBUR360115:GI0X-2141-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequencing of phylogenetically and phenotypically diverse Coxiella burnetii isolates."
      Seshadri R., Samuel J.E.
      Submitted (NOV-2007) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: RSA 331 / Henzerling IIImported.

    Entry informationi

    Entry nameiA9NBB8_COXBR
    AccessioniPrimary (citable) accession number: A9NBB8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 5, 2008
    Last sequence update: February 5, 2008
    Last modified: October 1, 2014
    This is version 40 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3