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Protein

Exodeoxyribonuclease 7 small subunit

Gene

xseB

Organism
Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides.UniRule annotation

Catalytic activityi

Exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield nucleoside 5'-phosphates.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Exonuclease, Hydrolase, Nuclease

Enzyme and pathway databases

BioCyciSENT28901:GH9O-3152-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Exodeoxyribonuclease 7 small subunitUniRule annotation (EC:3.1.11.6UniRule annotation)
Alternative name(s):
Exodeoxyribonuclease VII small subunitUniRule annotation
Short name:
Exonuclease VII small subunitUniRule annotation
Gene namesi
Name:xseBUniRule annotation
Ordered Locus Names:SPAB_03159
OrganismiSalmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Taxonomic identifieri1016998 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeSalmonella

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 8080Exodeoxyribonuclease 7 small subunitPRO_1000079292Add
BLAST

Proteomic databases

PRIDEiA9MX07.

Interactioni

Subunit structurei

Heterooligomer composed of large and small subunits.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliA9MX07.
SMRiA9MX07. Positions 7-67.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the XseB family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000228798.
KOiK03602.
OMAiAPLNDYK.
OrthoDBiEOG69KV31.

Family and domain databases

Gene3Di1.10.287.1040. 1 hit.
HAMAPiMF_00337. Exonuc_7_S.
InterProiIPR003761. Exonuc_VII_S.
[Graphical view]
PfamiPF02609. Exonuc_VII_S. 1 hit.
[Graphical view]
PIRSFiPIRSF006488. Exonuc_VII_S. 1 hit.
ProDomiPD028235. Exonuc_VII_S. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR01280. xseB. 1 hit.

Sequencei

Sequence statusi: Complete.

A9MX07-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKKNEAPAS FETALSELEH IVTRLESGDL PLEDALNEFE RGVQLARQGQ
60 70 80
AKLQQAEQRV QILLSDNEEA SPEPFIADNE
Length:80
Mass (Da):8,932
Last modified:February 5, 2008 - v1
Checksum:iDA2048043B55BE24
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000886 Genomic DNA. Translation: ABX68520.1.
RefSeqiWP_001124944.1. NC_010102.1.

Genome annotation databases

EnsemblBacteriaiABX68520; ABX68520; SPAB_03159.
KEGGispq:SPAB_03159.
PATRICi18533416. VBISalEnt120821_2563.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000886 Genomic DNA. Translation: ABX68520.1.
RefSeqiWP_001124944.1. NC_010102.1.

3D structure databases

ProteinModelPortaliA9MX07.
SMRiA9MX07. Positions 7-67.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiA9MX07.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABX68520; ABX68520; SPAB_03159.
KEGGispq:SPAB_03159.
PATRICi18533416. VBISalEnt120821_2563.

Phylogenomic databases

HOGENOMiHOG000228798.
KOiK03602.
OMAiAPLNDYK.
OrthoDBiEOG69KV31.

Enzyme and pathway databases

BioCyciSENT28901:GH9O-3152-MONOMER.

Family and domain databases

Gene3Di1.10.287.1040. 1 hit.
HAMAPiMF_00337. Exonuc_7_S.
InterProiIPR003761. Exonuc_VII_S.
[Graphical view]
PfamiPF02609. Exonuc_VII_S. 1 hit.
[Graphical view]
PIRSFiPIRSF006488. Exonuc_VII_S. 1 hit.
ProDomiPD028235. Exonuc_VII_S. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR01280. xseB. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-1250 / SPB7.

Entry informationi

Entry nameiEX7S_SALPB
AccessioniPrimary (citable) accession number: A9MX07
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: February 5, 2008
Last modified: November 11, 2015
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.