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Protein

D-serine dehydratase

Gene

dsdA

Organism
Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

D-serine = pyruvate + NH3.UniRule annotation

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Lyase

Keywords - Ligandi

Pyridoxal phosphate

Enzyme and pathway databases

BioCyciSENT882884:GJ8H-3840-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
D-serine dehydrataseUniRule annotation (EC:4.3.1.18UniRule annotation)
Alternative name(s):
D-serine deaminaseUniRule annotation
Short name:
DSDUniRule annotation
Gene namesi
Name:dsdAUniRule annotation
Ordered Locus Names:SARI_03847
OrganismiSalmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
Taxonomic identifieri41514 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeSalmonella
Proteomesi
  • UP000002084 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 440440D-serine dehydratasePRO_1000084242Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei116 – 1161N6-(pyridoxal phosphate)lysineUniRule annotation

Interactioni

Subunit structurei

Monomer.UniRule annotation

Protein-protein interaction databases

STRINGi882884.SARI_03847.

Structurei

3D structure databases

ProteinModelPortaliA9MKH2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the serine/threonine dehydratase family. DsdA subfamily.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105BZC. Bacteria.
COG3048. LUCA.
HOGENOMiHOG000218072.
KOiK01753.
OMAiHCLFAEP.
OrthoDBiEOG6HXJ23.

Family and domain databases

HAMAPiMF_01030. D_Ser_dehydrat.
InterProiIPR011780. D_Ser_am_lyase.
IPR000634. Ser/Thr_deHydtase_PyrdxlP-BS.
IPR001926. TrpB-like_PLP-dep.
[Graphical view]
PANTHERiPTHR10314:SF9. PTHR10314:SF9. 3 hits.
PfamiPF00291. PALP. 1 hit.
[Graphical view]
SUPFAMiSSF53686. SSF53686. 1 hit.
TIGRFAMsiTIGR02035. D_Ser_am_lyase. 1 hit.
PROSITEiPS00165. DEHYDRATASE_SER_THR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A9MKH2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MENIQKLIAR YPLVADLVAL KETTWFNPGA TSLAQGLPYV GLTEQDVNAA
60 70 80 90 100
HDRLARFAPY LAKAFPETAA AGGMIESDMV AIPAMQKRLE KEYGQTIDGE
110 120 130 140 150
MLLKKDSHLA ISGSIKARGG IYEVLTHAEK LALEAGLLTT DDDYSVLLSP
160 170 180 190 200
GFKQFFSRYS IAVGSTGNLG LSIGIMSACI GFKVTVHMSA DARAWKKAKL
210 220 230 240 250
RRHGVTVVEY EDDYGVAVEQ GRKAAQADPN CFFIDDENSR TLFLGYAVAG
260 270 280 290 300
QRLKAQFAQQ GRVVDASHPL FVYLPCGVGG GPGGVAFGLK LAFGDNVHCF
310 320 330 340 350
FAEPTHSPCM LLGVYTGLHD AISVQDIGID NLTAADGLAV GRASGFVGRA
360 370 380 390 400
MERLLDGLYT LDDQTMYDML GWLAQEEGIR LEPSALAGMA GPQRICAAAA
410 420 430 440
YPQKLGFGQA LLDNATHLVW ATGGGMVPED EMEQYLAKGR
Length:440
Mass (Da):47,210
Last modified:February 5, 2008 - v1
Checksum:i0CF5C74DE5B5FB18
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000880 Genomic DNA. Translation: ABX23641.1.
RefSeqiWP_000427980.1. NC_010067.1.

Genome annotation databases

EnsemblBacteriaiABX23641; ABX23641; SARI_03847.
KEGGises:SARI_03847.
PATRICi18476663. VBISalEnt13497_3644.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000880 Genomic DNA. Translation: ABX23641.1.
RefSeqiWP_000427980.1. NC_010067.1.

3D structure databases

ProteinModelPortaliA9MKH2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi882884.SARI_03847.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABX23641; ABX23641; SARI_03847.
KEGGises:SARI_03847.
PATRICi18476663. VBISalEnt13497_3644.

Phylogenomic databases

eggNOGiENOG4105BZC. Bacteria.
COG3048. LUCA.
HOGENOMiHOG000218072.
KOiK01753.
OMAiHCLFAEP.
OrthoDBiEOG6HXJ23.

Enzyme and pathway databases

BioCyciSENT882884:GJ8H-3840-MONOMER.

Family and domain databases

HAMAPiMF_01030. D_Ser_dehydrat.
InterProiIPR011780. D_Ser_am_lyase.
IPR000634. Ser/Thr_deHydtase_PyrdxlP-BS.
IPR001926. TrpB-like_PLP-dep.
[Graphical view]
PANTHERiPTHR10314:SF9. PTHR10314:SF9. 3 hits.
PfamiPF00291. PALP. 1 hit.
[Graphical view]
SUPFAMiSSF53686. SSF53686. 1 hit.
TIGRFAMsiTIGR02035. D_Ser_am_lyase. 1 hit.
PROSITEiPS00165. DEHYDRATASE_SER_THR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-731 / CDC346-86 / RSK2980.

Entry informationi

Entry nameiSDHD_SALAR
AccessioniPrimary (citable) accession number: A9MKH2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: February 5, 2008
Last modified: December 9, 2015
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.