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Protein

ATP synthase subunit b

Gene

atpF

Organism
Neisseria meningitidis serogroup C (strain 053442)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

F1F0 ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F1 containing the extramembraneous catalytic core and F0 containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F1 is coupled via a rotary mechanism of the central stalk subunits to proton translocation.UniRule annotation
Component of the F0 channel, it forms part of the peripheral stalk, linking F1 to F0.UniRule annotation

GO - Molecular functioni

  1. proton-transporting ATP synthase activity, rotational mechanism Source: UniProtKB-HAMAP

GO - Biological processi

  1. plasma membrane ATP synthesis coupled proton transport Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Biological processi

ATP synthesis, Hydrogen ion transport, Ion transport, Transport

Enzyme and pathway databases

BioCyciNMEN374833:GJ7Z-278-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
ATP synthase subunit bUniRule annotation
Alternative name(s):
ATP synthase F(0) sector subunit bUniRule annotation
ATPase subunit IUniRule annotation
F-type ATPase subunit bUniRule annotation
Short name:
F-ATPase subunit bUniRule annotation
Gene namesi
Name:atpFUniRule annotation
Ordered Locus Names:NMCC_0280
OrganismiNeisseria meningitidis serogroup C (strain 053442)
Taxonomic identifieri374833 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaNeisserialesNeisseriaceaeNeisseria
ProteomesiUP000001177: Chromosome

Subcellular locationi

Cell inner membrane UniRule annotation; Single-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei7 – 2721HelicalUniRule annotationAdd
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
  2. plasma membrane Source: UniProtKB-SubCell
  3. proton-transporting ATP synthase complex, coupling factor F(o) Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, CF(0), Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 156156ATP synthase subunit bPRO_0000368623Add
BLAST

Interactioni

Subunit structurei

F-type ATPases have 2 components, F1 - the catalytic core - and F0 - the membrane proton channel. F1 has five subunits: alpha3, beta3, gamma1, delta1, epsilon1. F0 has three main subunits: a1, b2 and c(10-14). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. F1 is attached to F0 by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta and b chains.UniRule annotation

Protein-protein interaction databases

STRINGi374833.NMCC_0280.

Structurei

3D structure databases

ProteinModelPortaliA9M119.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ATPase B chain family.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiCOG0711.
HOGENOMiHOG000015378.
KOiK02109.
OMAiILVWFTM.
OrthoDBiEOG6DNTDK.

Family and domain databases

Gene3Di1.20.5.620. 1 hit.
HAMAPiMF_01398. ATP_synth_b_bact.
InterProiIPR028987. ATPase_B-like_membr.
IPR002146. ATPase_F0-cplx_b/b'su_bac.
IPR005864. ATPase_F0-cplx_bsu_bac.
[Graphical view]
PfamiPF00430. ATP-synt_B. 1 hit.
[Graphical view]
SUPFAMiSSF81573. SSF81573. 1 hit.
TIGRFAMsiTIGR01144. ATP_synt_b. 1 hit.

Sequencei

Sequence statusi: Complete.

A9M119-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MNINATLFAQ IIVFFGLVWF TMKFVWPPIA KALDERAAKV AEGLAAAERG
60 70 80 90 100
KSDFEQAEKK VAELLAEGRN QVSEMVANAE KRAAKIVEEA KEQASSEAAR
110 120 130 140 150
IAAQAKADVE QELFRARESL REQVAVLAVK GAESILRSEV DASKHAKLLD

TLKQEL
Length:156
Mass (Da):17,139
Last modified:February 5, 2008 - v1
Checksum:i3DE2A468D7D4121E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000381 Genomic DNA. Translation: ABX72488.1.
RefSeqiYP_001598442.1. NC_010120.1.

Genome annotation databases

EnsemblBacteriaiABX72488; ABX72488; NMCC_0280.
GeneIDi5795047.
KEGGinmn:NMCC_0280.
PATRICi20344815. VBINeiMen117761_0336.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000381 Genomic DNA. Translation: ABX72488.1.
RefSeqiYP_001598442.1. NC_010120.1.

3D structure databases

ProteinModelPortaliA9M119.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi374833.NMCC_0280.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABX72488; ABX72488; NMCC_0280.
GeneIDi5795047.
KEGGinmn:NMCC_0280.
PATRICi20344815. VBINeiMen117761_0336.

Phylogenomic databases

eggNOGiCOG0711.
HOGENOMiHOG000015378.
KOiK02109.
OMAiILVWFTM.
OrthoDBiEOG6DNTDK.

Enzyme and pathway databases

BioCyciNMEN374833:GJ7Z-278-MONOMER.

Family and domain databases

Gene3Di1.20.5.620. 1 hit.
HAMAPiMF_01398. ATP_synth_b_bact.
InterProiIPR028987. ATPase_B-like_membr.
IPR002146. ATPase_F0-cplx_b/b'su_bac.
IPR005864. ATPase_F0-cplx_bsu_bac.
[Graphical view]
PfamiPF00430. ATP-synt_B. 1 hit.
[Graphical view]
SUPFAMiSSF81573. SSF81573. 1 hit.
TIGRFAMsiTIGR01144. ATP_synt_b. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Characterization of ST-4821 complex, a unique Neisseria meningitidis clone."
    Peng J., Yang L., Yang F., Yang J., Yan Y., Nie H., Zhang X., Xiong Z., Jiang Y., Cheng F., Xu X., Chen S., Sun L., Li W., Shen Y., Shao Z., Liang X., Xu J., Jin Q.
    Genomics 91:78-87(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 053442.

Entry informationi

Entry nameiATPF_NEIM0
AccessioniPrimary (citable) accession number: A9M119
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: February 5, 2008
Last modified: January 7, 2015
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.