Reviewed, UniProtKB/Swiss-Prot A9LYA4 (NDHJ_ACOAM)

Names and origin

Protein names

Recommended name:
    NAD(P)H-quinone oxidoreductase subunit J, chloroplastic
    EC=1.6.5.-
Alternative name(s):
    NAD(P)H dehydrogenase subunit J
    NADH-plastoquinone oxidoreductase subunit J

Gene names

Name:

ndhJ

Encoded on

Plastid; Chloroplast

Organism

Acorus americanus (Sweetflag)

Taxonomic identifier

263995 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Acoraceae › Acorus

Protein attributes

Sequence length	158 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient By similarity.
Catalytic activity	NAD(P)H + plastoquinone = NAD(P)+ + plastoquinol. HAMAP MF_01357
Subunit structure	NDH is composed of at least 16 different subunits, 5 of which are encoded in the nucleus By similarity.
Subcellular location	Plastid › chloroplast thylakoid membrane; Peripheral membrane protein; Stromal side By similarity.
Sequence similarities	Belongs to the complex I 30 kDa subunit family.

Ontologies

Keywords
Biological process	Transport
Cellular component	Chloroplast Membrane Plastid Thylakoid
Ligand	NAD NADP Plastoquinone
Molecular function	Oxidoreductase
PTM	Quinone
Gene Ontology (GO)
Biological process	oxidation reduction Inferred from electronic annotation. Source: HAMAP photosynthesis, light reaction Inferred from electronic annotation. Source: HAMAP transport Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	chloroplast thylakoid membrane Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	NADH dehydrogenase (ubiquinone) activity Inferred from electronic annotation. Source: InterPro quinone binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 158	158	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic HAMAP MF_01357		PRO_0000358235

Sequences

	Sequence		Length	Mass (Da)
	A9LYA4-1 [UniParc]. Last modified February 5, 2008. Version 1. Checksum: 0CD496051F160BEA	FASTA	158	18,674
	10 20 30 40 50 60 MQGRLSAWLV KHELVHRSLG FDYQGIEILQ IKPEDWDSIA VISYVYGYNY LRSQCAYDVA 70 80 90 100 110 120 PGGFLASVYH LTRIQYGVDQ PEEVCIKVFA PRRNPKIPSV FWIWRSADFQ ERESYDMLGI 130 140 150 SYENHPRLKR ILMPESWIGW PLRKDYIAPN FYEIQDAH

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns." Jansen R.K., Cai Z., Raubeson L.A., Daniell H., dePamphilis C.W., Leebens-Mack J., Muller K.F., Guisinger-Bellian M., Haberle R.C., Hansen A.K., Chumley T.W., Lee S.B., Peery R., McNeal J.R., Kuehl J.V., Boore J.L. Proc. Natl. Acad. Sci. U.S.A. 104:19369-19374(2007) [PubMed: 18048330] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]	"The complete chloroplast genome of Acorus americanus." Peery R.M., Chumley T.W., Kuehl J.V., Boore J.L., Raubeson L.A. Submitted (NOV-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	EU016719 Genomic DNA. Translation: ABU85160.1. EU273602 Genomic DNA. Translation: ABX38747.1.
RefSeq	YP_001586185.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	5777800.
Family and domain databases
HAMAP	MF_01357. [Tree]
InterPro	IPR001268. NADH_UbQ_OxRdtase_30kDa_su. [Graphical view]
Pfam	PF00329. Complex1_30kDa. 1 hit. [Graphical view]
ProDom	PD001581. Complex1_30K. 1 hit. [Graphical view] [Entries sharing at least one domain]
PROSITE	PS00542. COMPLEX1_30K. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

NDHJ_ACOAM

Accession

Primary (citable) accession number: A9LYA4
Secondary accession number(s): A9QAR7

Entry history

Integrated into UniProtKB/Swiss-Prot:	December 16, 2008
Last sequence update:	February 5, 2008
Last modified:	June 16, 2009
This is version 10 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)