Reviewed, UniProtKB/Swiss-Prot A9L9F3 (NDHH_LEMMI)

Names and origin

Protein names

Recommended name:
    NAD(P)H-quinone oxidoreductase subunit H, chloroplastic
    EC=1.6.5.-
Alternative name(s):
    NAD(P)H dehydrogenase subunit H
    NADH-plastoquinone oxidoreductase subunit H
    NADH-plastoquinone oxidoreductase 49 kDa subunit

Gene names

Name:

ndhH

Encoded on

Plastid; Chloroplast

Organism

Lemna minor (Common duckweed)

Taxonomic identifier

4472 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Araceae › Lemnoideae › Lemna

Protein attributes

Sequence length	395 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient By similarity.
Catalytic activity	NAD(P)H + plastoquinone = NAD(P)+ + plastoquinol. HAMAP MF_01358
Subunit structure	NDH is composed of at least 16 different subunits, 5 of which are encoded in the nucleus By similarity.
Subcellular location	Plastid › chloroplast thylakoid membrane; Peripheral membrane protein; Stromal side By similarity.
Sequence similarities	Belongs to the complex I 49 kDa subunit family.

Ontologies

Keywords
Biological process	Transport
Cellular component	Chloroplast Membrane Plastid Thylakoid
Ligand	NAD NADP Plastoquinone
Molecular function	Oxidoreductase
PTM	Quinone
Gene Ontology (GO)
Biological process	oxidation reduction Inferred from electronic annotation. Source: HAMAP photosynthesis, light reaction Inferred from electronic annotation. Source: HAMAP transport Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	chloroplast thylakoid membrane Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	NAD or NADH binding Inferred from electronic annotation. Source: InterPro electron carrier activity Inferred from electronic annotation. Source: InterPro oxidoreductase activity, acting on NADH or NADPH Inferred from electronic annotation. Source: InterPro quinone binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 395	395	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic HAMAP MF_01358		PRO_0000357999

Sequences

	Sequence		Length	Mass (Da)
	A9L9F3-1 [UniParc]. Last modified February 5, 2008. Version 1. Checksum: AC3ECFD2881DDE4E	FASTA	395	45,780
	10 20 30 40 50 60 MTGPTTNTKN DLMIVNMGPQ HPSMHGVLRL IVTLDGEDVI DCEPILGYLH RGMEKIAENR 70 80 90 100 110 120 TIVQYLPYVT RWDYLATMFT EAITVNAPEQ LGNIQVPQRA SYIRVIMLEL SRIASHLLWL 130 140 150 160 170 180 GPFMADIGAQ TPFFYIFRER ELIYDLFEAA TGMRMMHNYF RIGGVAADLP YGWIDKCLDF 190 200 210 220 230 240 CDYFLTGIDE YEKLITRNPI FLERVEGIGI ISGEEAINWG LSGPMLRASG ISWDLRKVDQ 250 260 270 280 290 300 YECYNEFDWE VQWQKEGDSL ARYLVRMSEM RESIKIIQQA LEGIPGGPYE NLEVRRFDKT 310 320 330 340 350 360 KDSEWNDFEY RFISKKPSPN FELSKQELYV RVEAPKGELG IFLIGDQNVF PWRWKIRPPG 370 380 390 FINLQILPQL VKRMKLADIM TILGSIDIIM GEVDR

References

[1]

"Complete sequence of the Duckweed (Lemna minor) chloroplast genome: structural organization and phylogenetic relationships to other angiosperms." Mardanov A.V., Ravin N.V., Kuznetsov B.B., Samigullin T.H., Antonov A.S., Kolganova T.V., Skyabin K.G. J. Mol. Evol. 66:555-564(2008) [PubMed: 18463914] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	DQ400350 Genomic DNA. Translation: ABD48552.1.
RefSeq	YP_001595565.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	5787523.
Family and domain databases
HAMAP	MF_01358. [Tree]
InterPro	IPR001135. NADH_Q_OxRdtase_suD. IPR014029. NADH_UbQ_OxRdtase_su-49kDa_CS. [Graphical view]
Pfam	PF00346. Complex1_49kDa. 1 hit. [Graphical view]
PROSITE	PS00535. COMPLEX1_49K. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

NDHH_LEMMI

Accession

Primary (citable) accession number: A9L9F3

Entry history

Integrated into UniProtKB/Swiss-Prot:	December 16, 2008
Last sequence update:	February 5, 2008
Last modified:	June 16, 2009
This is version 12 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)