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A9L1G5 (A9L1G5_SHEB9) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Peptide deformylase 3 HAMAP MF_00163
Short name=PDF 3 HAMAP MF_00163
EC=3.5.1.88 HAMAP MF_00163
Alternative name(s):
Polypeptide deformylase 3 HAMAP MF_00163
Gene names
Name:def3 HAMAP MF_00163
Ordered Locus Names:Sbal195_3599
OrganismShewanella baltica (strain OS195) [Complete proteome] [HAMAP] EMBL ABX50761.1
Taxonomic identifier399599 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length185 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology

General annotation (Comments)

Function

Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions By similarity. HAMAP MF_00163

Catalytic activity

Formyl-L-methionyl peptide + H2O = formate + methionyl peptide. HAMAP MF_00163 SAAS SAAS000181

Cofactor

Binds 1 Fe2+ ion By similarity. HAMAP MF_00163

Sequence similarities

Belongs to the polypeptide deformylase family. HAMAP MF_00163

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1521 By similarity HAMAP MF_00163
Metal binding1091Iron By similarity HAMAP MF_00163
Metal binding1511Iron By similarity HAMAP MF_00163
Metal binding1551Iron By similarity HAMAP MF_00163

Sequences

Sequence LengthMass (Da)Tools
A9L1G5 [UniParc].

Last modified February 5, 2008. Version 1.
Checksum: 59ABAAE380F8753D

FASTA18520,281
        10         20         30         40         50         60 
MFKHLMPKQT PPLLPIALVG EAILGQTAIA VHHFDAELAH LAEQMSASME AAKGVGIAAP 

        70         80         90        100        110        120 
QVHSPLALFI MASRPNERYP DAPNMAPVVV VNPQIIHASS ELVGGEEGCL SVPGQRFNIL 

       130        140        150        160        170        180 
RHQAIEVRYQ NLQGEWQQAE LTGFIARIFQ HEFDHLQGIT LLERSRMPEQ AQSISAQSIE 


QGEAQ

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References

[1]"Complete sequence of chromosome of Shewanella baltica OS195."
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E. expand/collapse author list , Brettar I., Rodrigues J., Konstantinidis K., Klappenbach J., Hofle M., Tiedje J., Richardson P.
Submitted (NOV-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: OS195.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000891 Genomic DNA. Translation: ABX50761.1.
RefSeqYP_001556021.1. NC_009997.1.

3D structure databases

ProteinModelPortalA9L1G5.
ModBaseSearch...

Protein-protein interaction databases

STRINGA9L1G5.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5755413.
GenomeReviewsGene locus Sbal195_3599 in contig CP000891_GR.
KEGGsbn:Sbal195_3599.
PATRIC23473593. VBISheBal33754_3731.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG665227.
OMAIRYEGFD.
ProtClustDBCLSK906069.

Enzyme and pathway databases

BioCycSBAL399599:SBAL195_3599-MONOMER.

Family and domain databases

HAMAPMF_00163. Pep_deformylase.
[Tree]
InterProIPR000181. Fmet_deformylase.
IPR023635. Peptide_deformylase.
[Graphical view]
Gene3DG3DSA:3.90.45.10. Fmet_deformylase. 1 hit.
KOK01462.
PANTHERPTHR10458. Fmet_deformylase. 1 hit.
PfamPF01327. Pep_deformylase. 1 hit.
[Graphical view]
PIRSFPIRSF004749. Pep_def. 1 hit.
PRINTSPR01576. PDEFORMYLASE.
SUPFAMSSF56420. Fmet_deformylase. 1 hit.
TIGRFAMsTIGR00079. Pept_deformyl. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA9L1G5_SHEB9
AccessionPrimary (citable) accession number: A9L1G5
Entry history
Integrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: December 14, 2011
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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