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A9KVB0 (RLMF_SHEB9) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ribosomal RNA large subunit methyltransferase F
EC=2.1.1.181
Alternative name(s):
23S rRNA mA1618 methyltransferase
rRNA adenine N-6-methyltransferase
Gene names
Name:rlmF
Ordered Locus Names:Sbal195_0132
OrganismShewanella baltica (strain OS195) [Complete proteome] [HAMAP]
Taxonomic identifier399599 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length365 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Specifically methylates the adenine in position 1618 of 23S rRNA By similarity. HAMAP MF_01848

Catalytic activity

S-adenosyl-L-methionine + adenine(1618) in 23S rRNA = S-adenosyl-L-homocysteine + rRNA containing N(6)-methyladenine(1618) in 23S rRNA. HAMAP MF_01848

Subcellular location

Cytoplasm Potential HAMAP MF_01848.

Sequence similarities

Belongs to the methyltransferase superfamily. METTL16/rlmF family.

Ontologies

Keywords
   Biological processrRNA processing
   Cellular componentCytoplasm
   LigandS-adenosyl-L-methionine
   Molecular functionMethyltransferase
Transferase
   Technical termComplete proteome
Gene Ontology (GO)
   Cellular componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functionrRNA (adenine-N6-)-methyltransferase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 365365Ribosomal RNA large subunit methyltransferase F HAMAP MF_01848
PRO_0000349953

Sequences

Sequence LengthMass (Da)Tools
A9KVB0 [UniParc].

Last modified February 5, 2008. Version 1.
Checksum: 5CE9EEEB75A07FC5

FASTA36540,021
        10         20         30         40         50         60 
MSKPAVKSVP SATAKTATRA ANPRQKAKAP KQAKPEGKGR AKPSKDKPRA EIKKALHPRN 

        70         80         90        100        110        120 
AHLNGYDFPA LISAFPRLKT FVRPTPYGAL SVNFADPLAV KTLNAALLKH HYGIGSWNIP 

       130        140        150        160        170        180 
EGALCPPIPG RVDYVHYVAD LLAEGDKSCA MDKARVLDIG TGANGIYPIL GCQVYGWQYV 

       190        200        210        220        230        240 
ASDINAHSLA NVQSIIEQNP VLQGRISLRL QPDDKAVFKG IIQAEERFEL TLCNPPFHAS 

       250        260        270        280        290        300 
MAEASEGTKR KVNNLQLNRG SSVKAAPKLN FGGQAAELWC QGGEGQFLAT MIRESQMFAD 

       310        320        330        340        350        360 
QCLWFTSLVS KQENLKPCYQ ALAQLNVDTV KTIEMQQGNK ITRVLAWSFQ SAAKRKLWRA 


EHLAR

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References

[1]"Complete sequence of chromosome of Shewanella baltica OS195."
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E. expand/collapse author list , Brettar I., Rodrigues J., Konstantinidis K., Klappenbach J., Hofle M., Tiedje J., Richardson P.
Submitted (NOV-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: OS195.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000891 Genomic DNA. Translation: ABX47314.1.
RefSeqYP_001552574.1. NC_009997.1.

3D structure databases

ProteinModelPortalA9KVB0.
ModBaseSearch...

Protein-protein interaction databases

STRINGA9KVB0.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5751829.
GenomeReviewsGene locus Sbal195_0132 in contig CP000891_GR.
KEGGsbn:Sbal195_0132.
PATRIC23466176. VBISheBal33754_0137.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG747880.
OMAWSFVGSD.
ProtClustDBPRK11727.

Enzyme and pathway databases

BioCycSBAL399599:SBAL195_0132-MONOMER.

Family and domain databases

HAMAPMF_01848. 23SrRNA_methyltr_F.
[Tree]
InterProIPR016909. rRNA_lsu_methyltransferase_F.
IPR010286. SAM-Mtase_prd.
[Graphical view]
KOK06970.
PANTHERPTHR13393. DUF890. 1 hit.
PfamPF05971. Methyltransf_10. 1 hit.
[Graphical view]
PIRSFPIRSF029038. Mtase_YbiN_prd. 1 hit.
ProtoNetSearch...

Entry information

Entry nameRLMF_SHEB9
AccessionPrimary (citable) accession number: A9KVB0
Entry history
Integrated into UniProtKB/Swiss-Prot: September 2, 2008
Last sequence update: February 5, 2008
Last modified: January 25, 2012
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

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