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Protein

Ribosomal RNA large subunit methyltransferase F

Gene

rlmF

Organism
Shewanella baltica (strain OS195)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Specifically methylates the adenine in position 1618 of 23S rRNA.UniRule annotation

Catalytic activityi

S-adenosyl-L-methionine + adenine(1618) in 23S rRNA = S-adenosyl-L-homocysteine + rRNA containing N(6)-methyladenine(1618) in 23S rRNA.UniRule annotation

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Methyltransferase, Transferase

Keywords - Biological processi

rRNA processing

Keywords - Ligandi

S-adenosyl-L-methionine

Enzyme and pathway databases

BioCyciSBAL399599:GH6B-137-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosomal RNA large subunit methyltransferase FUniRule annotation (EC:2.1.1.181UniRule annotation)
Alternative name(s):
23S rRNA mA1618 methyltransferaseUniRule annotation
rRNA adenine N-6-methyltransferaseUniRule annotation
Gene namesi
Name:rlmFUniRule annotation
Ordered Locus Names:Sbal195_0132
OrganismiShewanella baltica (strain OS195)
Taxonomic identifieri399599 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
Proteomesi
  • UP000000770 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 365365Ribosomal RNA large subunit methyltransferase FPRO_0000349953Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliA9KVB0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the methyltransferase superfamily. METTL16/RlmF family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000218605.
KOiK06970.
OMAiVTLCNPP.
OrthoDBiEOG6742SX.

Family and domain databases

Gene3Di3.40.50.150. 1 hit.
HAMAPiMF_01848. 23SrRNA_methyltr_F.
InterProiIPR016909. rRNA_lsu_MeTfrase_F.
IPR010286. rRNA_lsu_MeTfrase_F-like.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PANTHERiPTHR13393. PTHR13393. 1 hit.
PfamiPF05971. Methyltransf_10. 1 hit.
[Graphical view]
PIRSFiPIRSF029038. Mtase_YbiN_prd. 1 hit.
SUPFAMiSSF53335. SSF53335. 1 hit.

Sequencei

Sequence statusi: Complete.

A9KVB0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKPAVKSVP SATAKTATRA ANPRQKAKAP KQAKPEGKGR AKPSKDKPRA
60 70 80 90 100
EIKKALHPRN AHLNGYDFPA LISAFPRLKT FVRPTPYGAL SVNFADPLAV
110 120 130 140 150
KTLNAALLKH HYGIGSWNIP EGALCPPIPG RVDYVHYVAD LLAEGDKSCA
160 170 180 190 200
MDKARVLDIG TGANGIYPIL GCQVYGWQYV ASDINAHSLA NVQSIIEQNP
210 220 230 240 250
VLQGRISLRL QPDDKAVFKG IIQAEERFEL TLCNPPFHAS MAEASEGTKR
260 270 280 290 300
KVNNLQLNRG SSVKAAPKLN FGGQAAELWC QGGEGQFLAT MIRESQMFAD
310 320 330 340 350
QCLWFTSLVS KQENLKPCYQ ALAQLNVDTV KTIEMQQGNK ITRVLAWSFQ
360
SAAKRKLWRA EHLAR
Length:365
Mass (Da):40,021
Last modified:February 5, 2008 - v1
Checksum:i5CE9EEEB75A07FC5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000891 Genomic DNA. Translation: ABX47314.1.
RefSeqiWP_012196511.1. NC_009997.1.

Genome annotation databases

EnsemblBacteriaiABX47314; ABX47314; Sbal195_0132.
GeneIDi11770492.
KEGGisbn:Sbal195_0132.
sbt:Sbal678_0135.
PATRICi23466176. VBISheBal33754_0137.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000891 Genomic DNA. Translation: ABX47314.1.
RefSeqiWP_012196511.1. NC_009997.1.

3D structure databases

ProteinModelPortaliA9KVB0.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABX47314; ABX47314; Sbal195_0132.
GeneIDi11770492.
KEGGisbn:Sbal195_0132.
sbt:Sbal678_0135.
PATRICi23466176. VBISheBal33754_0137.

Phylogenomic databases

HOGENOMiHOG000218605.
KOiK06970.
OMAiVTLCNPP.
OrthoDBiEOG6742SX.

Enzyme and pathway databases

BioCyciSBAL399599:GH6B-137-MONOMER.

Family and domain databases

Gene3Di3.40.50.150. 1 hit.
HAMAPiMF_01848. 23SrRNA_methyltr_F.
InterProiIPR016909. rRNA_lsu_MeTfrase_F.
IPR010286. rRNA_lsu_MeTfrase_F-like.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PANTHERiPTHR13393. PTHR13393. 1 hit.
PfamiPF05971. Methyltransf_10. 1 hit.
[Graphical view]
PIRSFiPIRSF029038. Mtase_YbiN_prd. 1 hit.
SUPFAMiSSF53335. SSF53335. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: OS195.

Entry informationi

Entry nameiRLMF_SHEB9
AccessioniPrimary (citable) accession number: A9KVB0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 2, 2008
Last sequence update: February 5, 2008
Last modified: March 16, 2016
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.