A9KRF0 (A9KRF0_CLOPH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Peptidoglycan-binding LysM EMBL ABX42024.1

Gene names

Ordered Locus Names:

Cphy_1652

Organism

Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) [Complete proteome] [HAMAP]

Taxonomic identifier

357809 [NCBI]

Taxonomic lineage

Bacteria › Firmicutes › Clostridia › Clostridiales › Clostridiaceae › Clostridium

Protein attributes

Sequence length	423 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 18 family. RuleBase RU004453

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	cell wall macromolecule catabolic process Inferred from electronic annotation. Source: InterPro chitin catabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	cation binding Inferred from electronic annotation. Source: InterPro chitinase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A9KRF0 [UniParc]. Last modified February 5, 2008. Version 1. Checksum: 6622AA4EE6F733ED	FASTA	423	48,086
	10 20 30 40 50 60 MEIHVVKPGD SVLSIANQYG VSVQRLIFDN EIYTPENLVV GQALLILHPT KIYQVKPGDT 70 80 90 100 110 120 LYSIAQDFQV SVISLIRNNP YIIQERQLSE GQVLVITYEG VRDKIISTNG YVYPYVNRQV 130 140 150 160 170 180 LEQTLPYLTN LSIFSYGFTT EGELIPIDDD EVLEITTKHG VGPVLTLTPL DENGMFNNAL 190 200 210 220 230 240 VSAVAQNVEV RDHLIDELLA VVKEKQYVGV NVDFEYIKAE DRIGFAEFVA ELTRRMNEED 250 260 270 280 290 300 FFVSVALAPK TSENQPGLLY EGMDYRLLGE AANSVLLMTY EWGYTYSEPM AVAPINKVRE 310 320 330 340 350 360 VLDFAVTQIP VDRIDMGIPN YGYDWALPYV KGETRARAIG NIEAVQIAAA NNAVIQFDEV 370 380 390 400 410 420 AQTPFFTYTR EGVDHEVWFE DVRSIKAKLD LVKEYDFRGV GYWQLMRLFR PNWLLLNSMF EIL

References

[1]

"Complete genome sequence of Clostridium phytofermentans ISDg." Leschine S.B., Warnick T.A., Blanchard J.L., Schnell D.J., Petit E.L., LaTouf W.G., Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Detter J.C. , Han C., Kuske C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E.A., Richardson P. Submitted (NOV-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000885 Genomic DNA. Translation: ABX42024.1.
RefSeq	YP_001558763.1. NC_010001.1.
3D structure databases
ProteinModelPortal	A9KRF0.
ModBase	Search...
Protein-protein interaction databases
STRING	A9KRF0.
Protein family/group databases
CAZy	CBM50. Carbohydrate-Binding Module Family 50. GH18. Glycoside Hydrolase Family 18.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5744473.
GenomeReviews	Gene locus Cphy_1652 in contig CP000885_GR.
KEGG	cpy:Cphy_1652.
PATRIC	19502940. VBICloPhy16213_1709.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG337948.
OMA	WYEAHDY.
ProtClustDB	CLSK2796399.
Family and domain databases
InterPro	IPR011583. Chitinase_II. IPR001223. Glyco_hydro18cat. IPR013781. Glyco_hydro_subgr_catalytic. IPR017853. Glycoside_hydrolase_SF. IPR018392. Peptidoglycan-bd_lysin. IPR002482. Peptidoglycan-bd_Lysin_subgr. [Graphical view]
Gene3D	G3DSA:3.20.20.80. Glyco_hydro_cat. 2 hits.
KO	K06306.
Pfam	PF00704. Glyco_hydro_18. 1 hit. PF01476. LysM. 2 hits. [Graphical view]
SMART	SM00636. Glyco_18. 1 hit. SM00257. LysM. 2 hits. [Graphical view]
SUPFAM	SSF51445. Glyco_hydro_cat. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A9KRF0_CLOPH

Accession

Primary (citable) accession number: A9KRF0

Entry history

Integrated into UniProtKB/TrEMBL:	February 5, 2008
Last sequence update:	February 5, 2008
Last modified:	December 14, 2011
This is version 27 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)