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A9KKG9 (A9KKG9_CLOPH) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 38. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Deoxyribose-phosphate aldolase HAMAP MF_00114
Short name=DERA HAMAP MF_00114
EC=4.1.2.4 HAMAP MF_00114
Alternative name(s):
2-deoxy-D-ribose 5-phosphate aldolase HAMAP MF_00114
Phosphodeoxyriboaldolase HAMAP MF_00114
Gene names
Name:deoC HAMAP MF_00114
Ordered Locus Names:Cphy_0753
OrganismClostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) [Complete proteome] [HAMAP]
Taxonomic identifier357809 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Clostridia › Clostridiales › Clostridiaceae › Clostridium

Protein attributes

Sequence length231 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate By similarity. HAMAP MF_00114 SAAS SAAS022979

Catalytic activity

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. HAMAP MF_00114 SAAS SAAS022979

Pathway

Carbohydrate degradation; 2-deoxy-D-ribose 1-phosphate degradation; D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-alpha-D-ribose 1-phosphate: step 2/2. HAMAP MF_00114 SAAS SAAS022979

Subcellular location

Cytoplasm By similarity HAMAP MF_00114 SAAS SAAS022979.

Sequence similarities

Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. HAMAP MF_00114

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1631Schiff-base intermediate with acetaldehyde By similarity HAMAP MF_00114
Active site1921 By similarity HAMAP MF_00114

Sequences

Sequence LengthMass (Da)Tools
A9KKG9 [UniParc].

Last modified February 5, 2008. Version 1.
Checksum: C45C5FB61F555BE2

FASTA23125,478
        10         20         30         40         50         60 
MALKRGMDVK MEKKEIFKTV DHTLLTQTAT WKDIKQICDD AITYQTASVC IPPSFVKRAK 

        70         80         90        100        110        120 
EYVDGRMAVC TVIGFPNGYN TTYVKVMETK EALDNGADEI DMVVNLGDVK DGKFDEVLEE 

       130        140        150        160        170        180 
IRQIKKACGD KILKVIIETC LLTEEEKIAM CDVVTKSGAD YIKTSTGFST AGATFEDIEL 

       190        200        210        220        230 
FSKHIGKDVK MKAAGGITSF DDAIRFIELG ASRLGTSRIV KLAKNESANG Y

« Hide

References

[1]"Complete genome sequence of Clostridium phytofermentans ISDg."
Leschine S.B., Warnick T.A., Blanchard J.L., Schnell D.J., Petit E.L., LaTouf W.G., Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Detter J.C. expand/collapse author list , Han C., Kuske C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E.A., Richardson P.
Submitted (NOV-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000885 Genomic DNA. Translation: ABX41140.1.
RefSeqYP_001557879.1. NC_010001.1.

3D structure databases

ProteinModelPortalA9KKG9.
ModBaseSearch...

Protein-protein interaction databases

STRINGA9KKG9.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5743869.
GenomeReviewsGene locus Cphy_0753 in contig CP000885_GR.
KEGGcpy:Cphy_0753.
PATRIC19501076. VBICloPhy16213_0780.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG636421.
OMAEEKIAMC.
ProtClustDBPRK00507.

Family and domain databases

HAMAPMF_00114. DeoC_type1.
[Tree]
InterProIPR013785. Aldolase_TIM.
IPR011343. DeoC.
IPR002915. DeoC/AroFGH_arch.
IPR022979. Deoxyribose_phosphate_aldo_1.
[Graphical view]
Gene3DG3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KOK01619.
PANTHERPTHR10889. DeoC. 1 hit.
PfamPF01791. DeoC. 1 hit.
[Graphical view]
PIRSFPIRSF001357. DeoC. 1 hit.
TIGRFAMsTIGR00126. DeoC. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA9KKG9_CLOPH
AccessionPrimary (citable) accession number: A9KKG9
Entry history
Integrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: December 14, 2011
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info