A9KI42 (A9KI42_CLOPH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Heparinase II/III family protein EMBL ABX40876.1

Gene names

Ordered Locus Names:

Cphy_0489

Organism

Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) [Complete proteome] [HAMAP]

Taxonomic identifier

357809 [NCBI]

Taxonomic lineage

Bacteria › Firmicutes › Clostridia › Clostridiales › Clostridiaceae › Clostridium

Protein attributes

Sequence length	622 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	alginic acid catabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	periplasmic space Inferred from electronic annotation. Source: InterPro
Molecular function	poly(beta-D-mannuronate) lyase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A9KI42 [UniParc]. Last modified February 5, 2008. Version 1. Checksum: 4FB9DD941E368D76	FASTA	622	72,041
	10 20 30 40 50 60 MYFEYQNYLK NNENYHDMLT AMKQETEYFM ERFKDDPRFL SGWGHGYFCN EDGGRLIYDI 70 80 90 100 110 120 NKPYEHKCSI CGKVYSEFIY DSYFITMFRN DAVVTAMKAA LLYAVYAEEK YLTFVKTIVG 130 140 150 160 170 180 FYADNYEHFA VHAKEKINCN LNEDVGGAGK IMPQGLNEAI VAIRFIIALE LVKDSLDTTW 190 200 210 220 230 240 IQEVNEKLFA PMVKLLLPQK MHIHNIPVWI NSAIGSMGLF FQEEEWVKEA TKNPYHVYEQ 250 260 270 280 290 300 IRKGVTDSGF WYEGSIHYNF FALEGLMSFL VFAKAYHLEI PADINETVFH MLEAAYEYAF 310 320 330 340 350 360 DNDLFPNPSD GWPNISLKTY SYIYFMGYKV FGEKVLPFIK HIENTPGERG KLPLSEPYYY 370 380 390 400 410 420 KNKISLERIL FGPDIMELKA EEIKSRGSKN FSGSNCAILR NNEFNVFLKY GHQTKSHAHP 430 440 450 460 470 480 DKMNIEIMVG GKVLTKDLSN SGYASKLCNG WHRTIAAHNT CVVNGMSTDI TKSGEVTQFS 490 500 510 520 530 540 DNLIEAKAMA YEGVMYTRKF ELRDETLLDS FLVSCEKSSV IDWFFHFETP IETEQLKLKE 550 560 570 580 590 600 VNLFTEYPYV TKVSEIETEE KTLILKNDLV TMQLILEEGV KVYFTKTYNN PANTMRDTII 610 620 LRKEGKEARF QNVITKLKNG LN

References

[1]

"Complete genome sequence of Clostridium phytofermentans ISDg." Leschine S.B., Warnick T.A., Blanchard J.L., Schnell D.J., Petit E.L., LaTouf W.G., Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Detter J.C. , Han C., Kuske C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E.A., Richardson P. Submitted (NOV-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000885 Genomic DNA. Translation: ABX40876.1.
RefSeq	YP_001557615.1. NC_010001.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	A9KI42.
Protein family/group databases
CAZy	PL17. Polysaccharide Lyase Family 17.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5745249.
GenomeReviews	Gene locus Cphy_0489 in contig CP000885_GR.
KEGG	cpy:Cphy_0489.
PATRIC	19500520. VBICloPhy16213_0502.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	PADINET.
ProtClustDB	CLSK2796292.
Family and domain databases
InterPro	IPR008397. Alginate_lyase_dom. IPR008929. Chondroitin_lyas. IPR012480. Hepar_II_III. [Graphical view]
Gene3D	G3DSA:1.50.10.110. Alginate_lyase. 1 hit.
Pfam	PF07940. Hepar_II_III. 1 hit. [Graphical view]
SUPFAM	SSF48230. Chondroitin_lyas. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A9KI42_CLOPH

Accession

Primary (citable) accession number: A9KI42

Entry history

Integrated into UniProtKB/TrEMBL:	February 5, 2008
Last sequence update:	February 5, 2008
Last modified:	December 14, 2011
This is version 16 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)