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Protein
Submitted name:

LOC100127292 protein

Gene

rnf20

Organism
Xenopus laevis (African clawed frog)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
LOC100127292 proteinImported
Gene namesi
Name:rnf20Imported
Synonyms:LOC100127292Imported
OrganismiXenopus laevis (African clawed frog)Imported
Taxonomic identifieri8355 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusXenopus

Organism-specific databases

XenbaseiXB-GENE-5746958. rnf20.

Interactioni

Protein-protein interaction databases

IntActiA9JS25. 1 interaction.

Structurei

3D structure databases

ProteinModelPortaliA9JS25.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini912 – 95140RING-typeInterPro annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili51 – 8232Sequence analysisAdd
BLAST
Coiled coili225 – 26339Sequence analysisAdd
BLAST
Coiled coili271 – 29828Sequence analysisAdd
BLAST
Coiled coili336 – 37338Sequence analysisAdd
BLAST
Coiled coili431 – 46535Sequence analysisAdd
BLAST
Coiled coili480 – 50728Sequence analysisAdd
BLAST
Coiled coili657 – 68428Sequence analysisAdd
BLAST
Coiled coili687 – 71428Sequence analysisAdd
BLAST
Coiled coili764 – 79835Sequence analysisAdd
BLAST
Coiled coili820 – 85435Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis, Zinc-fingerUniRule annotation

Phylogenomic databases

HOVERGENiHBG080312.
KOiK10696.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
InterProiIPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
IPR017907. Znf_RING_CS.
[Graphical view]
SMARTiSM00184. RING. 1 hit.
[Graphical view]
PROSITEiPS00518. ZF_RING_1. 1 hit.
PS50089. ZF_RING_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A9JS25-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSGPGSKRVA GDVGSLGPPE KKAAVEDSGT TVETIKLGSV SSTEEQDLRT
60 70 80 90 100
LQLKNKKLAG MLDQRQAIED ELRDRIETLE RRQATDDASL LIVNRYWSQF
110 120 130 140 150
DENIGILLGR YDLDQDLGEF LTERKALVLP EPEPDSDSNP ERKENERGEG
160 170 180 190 200
LWEAPLSFLA TLASSSSEEI ESQLQERVES SRRAVSRIVL VYDRLHDQLD
210 220 230 240 250
HLSKKLNSTD PSQMEEAIRD LNSMLSNENV RLQEISNLLQ EKQQNMSQEF
260 270 280 290 300
LQMQSRLESA ESRVLVLDGH IEDLQWDIDK IRKREQRLNR HLSEVLERVN
310 320 330 340 350
SKGYKVYGAG SSLYGGTITI NSRKFEEMTS EVDLNKELAV NRLQELEKLR
360 370 380 390 400
QDLQEVTSEN QELQAELASA VEENVRLSPE YRCMQSQFSV LYNESLQLKT
410 420 430 440 450
QLDEARSLLH GTRSNHQRQL ELIERDEISL QKKVRTEVIQ LEDTLAQVRK
460 470 480 490 500
EYEMLRIEFE QTLAANEQAG PINREMRHLI SSLQNHNHQL KGEVLRYKRR
510 520 530 540 550
LREIQGDISK MRSRSSSSLF LLPSQSSTEE TREETAEIKT EPEDTFANAP
560 570 580 590 600
APPQPEIVPK REEEEVQPPL QQPQRDRRER ERERERDRGR EKERGDSSKE
610 620 630 640 650
KPKHEADTKR KDADTVKQMK ADLKRVQESL RDMKLLLDMY RSAPKEQRDK
660 670 680 690 700
VQLMAAERKS KAELEELRLR LRELEERERR DSKKMADEDA LRRMRAAEEQ
710 720 730 740 750
TEVLQKRLSV AKQEEEALLS EMDVTGQAFE DMQEQNIRLM QQLREKDDAN
760 770 780 790 800
FKLMSERIKS NQIHKLLKEE KEELADQLLT LRTQVDAQLQ VLRKLEEKEH
810 820 830 840 850
LLQTSINTGE KELTLRTQAL DLCKRKATES SQQAEELRSQ LELSQKKLQD
860 870 880 890 900
LRGEIIENTA SREKDAFNYK RAQEDISRLR KKLESTKKPD LVPTCDKILM
910 920 930 940 950
EEIKEYKARL TCPCCNSRKM DAVLTKCFHV FCFECVKTRY DTRQRKCPKC
960
NAAFGANDFH RIYIG
Length:965
Mass (Da):112,241
Last modified:February 5, 2008 - v1
Checksum:i1A79BE98C53FA463
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC155890 mRNA. Translation: AAI55891.1.
RefSeqiNP_001106332.1. NM_001112861.1.
UniGeneiXl.8198.

Genome annotation databases

GeneIDi100127292.
KEGGixla:100127292.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC155890 mRNA. Translation: AAI55891.1.
RefSeqiNP_001106332.1. NM_001112861.1.
UniGeneiXl.8198.

3D structure databases

ProteinModelPortaliA9JS25.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiA9JS25. 1 interaction.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi100127292.
KEGGixla:100127292.

Organism-specific databases

CTDi56254.
XenbaseiXB-GENE-5746958. rnf20.

Phylogenomic databases

HOVERGENiHBG080312.
KOiK10696.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
InterProiIPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
IPR017907. Znf_RING_CS.
[Graphical view]
SMARTiSM00184. RING. 1 hit.
[Graphical view]
PROSITEiPS00518. ZF_RING_1. 1 hit.
PS50089. ZF_RING_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. NIH - Xenopus Gene Collection (XGC) project
    Submitted (DEC-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Thymus/thymocytesImported.

Entry informationi

Entry nameiA9JS25_XENLA
AccessioniPrimary (citable) accession number: A9JS25
Entry historyi
Integrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: March 16, 2016
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.