A9JRH0 (A9JRH0_DANRE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Leucine rich repeat neuronal 1 Ensembl ENSDARP00000078824

Submitted name:
Lrrn1 protein EMBL AAI55657.1

Gene names

Name:

lrrn1 Ensembl ENSDARP00000078824 ZFIN ZDB-GENE-071126-1 EMBL AAI55657.1

Organism

Danio rerio (Zebrafish) (Brachydanio rerio) EMBL AAI55657.1

Taxonomic identifier

7955 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Ostariophysi › Cypriniformes › Cyprinidae › Danio

Protein attributes

Sequence length	717 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Sequence similarities

Contains 1 LRRCT domain. SAAS SAAS000483 Contains 1 LRRNT domain. SAAS SAAS003591

Ontologies

Keywords
Domain	Immunoglobulin domain SAAS SAAS000372 Leucine-rich repeat SAAS SAAS000372 Repeat SAAS SAAS000372
PTM	Disulfide bond SAAS SAAS000372
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Molecular function	protein binding Inferred from physical interaction. Source: ZFIN
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A9JRH0 [UniParc]. Last modified February 5, 2008. Version 1. Checksum: E80F56FDDE53731C	FASTA	717	80,984
	10 20 30 40 50 60 MARGTFFLVV EGQICFILLL AVLGLSSVHS TECPQLCVCE IRPWFTPQST YREATTVDCN 70 80 90 100 110 120 DLHLTRIPGN LSADTQVLLL QSNYIARTSE ELEQLLNLTE LDLSQNNFSN IRDIGLTNMS 130 140 150 160 170 180 QLTTLHLEEN QIVEMPDFSL QDLTNLQELY INHNQISSIA PNAFAGLRNL LRLHLNSNRL 190 200 210 220 230 240 KAIDSRWFES TPNLEILMIG ENPVVGILDL NFKPLTNLRS LVLAGMELTD IPGNAFVGLD 250 260 270 280 290 300 NLESLSFYDN KLVRVPQTAL QKLPNLKFLD LNKNPIHKIQ EGDFKNMLRL KELGINNMGE 310 320 330 340 350 360 LVSIDRFALD NLPELTKLEA TNNPKFSYVS RLAFRDLPAL ESLMLNNNAL NSLYQATADS 370 380 390 400 410 420 LPNLREISIH SNPLRCDCVI QWMSSNKTTI RFMEPLSMFC TMPIEVRGQR VRDVFSREPS 430 440 450 460 470 480 GQCLPMISHD TFPNHLNLDI GMTVDLDCRA MAEPEPEIYW VTPSGNKVMM DTVSDKYQLN 490 500 510 520 530 540 SAGTLRISYI QVDDSGHYTC VAQNTEGADT RVTAIRVNGT LLDSTQLMKI YVKHTESHSI 550 560 570 580 590 600 LVSWKVNSNV MTSNLKWSSA TMKIDNPHIT YTAKVPVDVH EYNLTHLQPA TEYEVCLSVS 610 620 630 640 650 660 NIHQQTQKSC VNVTTKHATF AVEISEQGTN TALAAVMGTI LAIISLGSIT LYIAKRWKRK 670 680 690 700 710 NYHHSLKKYM QKTSSIPLNE LYPPLINLWE ADSEKDKDGS SDNKQTQVDT TRSYYMW

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	NIH - Zebrafish Gene Collection (ZGC) project Submitted (DEC-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Whole EMBL AAI55657.1.
[2]	"The genomic sequence of Danio rerio." The Danio rerio Sequencing Project at the Sanger Institute Submitted (JUL-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Tuebingen Ensembl ENSDARP00000078824.
[3]	Ensembl Submitted (JUL-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: Tuebingen Ensembl ENSDARP00000078824.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CU468905 Genomic DNA. No translation available. BC155656 mRNA. Translation: AAI55657.1.
IPI	IPI00806642.
RefSeq	NP_001124166.1. NM_001130694.1.
UniGene	Dr.29133.
3D structure databases
ProteinModelPortal	A9JRH0.
ModBase	Search...
Protein-protein interaction databases
IntAct	A9JRH0. 1 interaction.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSDART00000084389; ENSDARP00000078824; ENSDARG00000060115.
GeneID	568527.
KEGG	dre:568527.
Organism-specific databases
CTD	57633.
ZFIN	ZDB-GENE-071126-1. lrrn1.
Phylogenomic databases
GeneTree	ENSGT00600000084069.
HOGENOM	HBG443710.
HOVERGEN	HBG052361.
OMA	LKWSSAT.
Gene expression databases
Bgee	A9JRH0.
Family and domain databases
InterPro	IPR000483. Cys-rich_flank_reg_C. IPR003961. Fibronectin_type3. IPR007110. Ig-like. IPR013783. Ig-like_fold. IPR013098. Ig_I-set. IPR003598. Ig_sub2. IPR001611. Leu-rich_rpt. IPR003591. Leu-rich_rpt_typical-subtyp. IPR000372. LRR-contain_N. [Graphical view]
Gene3D	G3DSA:2.60.40.10. Ig-like_fold. 2 hits.
Pfam	PF07679. I-set. 1 hit. [Graphical view]
SMART	SM00060. FN3. 1 hit. SM00408. IGc2. 1 hit. SM00369. LRR_TYP. 2 hits. SM00082. LRRCT. 1 hit. SM00013. LRRNT. 1 hit. [Graphical view]
SUPFAM	SSF49265. FN_III-like. 1 hit.
PROSITE	PS50853. FN3. 1 hit. PS50835. IG_LIKE. 1 hit. PS51450. LRR. 9 hits. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A9JRH0_DANRE

Accession

Primary (citable) accession number: A9JRH0

Entry history

Integrated into UniProtKB/TrEMBL:	February 5, 2008
Last sequence update:	February 5, 2008
Last modified:	January 25, 2012
This is version 38 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)