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A9JRD3 (A9JRD3_DANRE) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 54. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length499 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
A9JRD3 [UniParc].

Last modified February 5, 2008. Version 1.
Checksum: BA33A6D7BCC5FC7D

FASTA49957,763
        10         20         30         40         50         60 
MARRPGTAGR SQISDTSETP SQPPTSADRK LLEKVLKRLD KLHKLSVDPR LALKNSPPYL 

        70         80         90        100        110        120 
PELLSETAIH LTEVWAPYRG SAMAVPRWDE GDYMRIHIRH LLDKTDRAVL LFKEGKEKMF 

       130        140        150        160        170        180 
EETSNYRRNL TKLSLLFSHM LNELRTIFPG GRFQGDTYRV TKTEAKEFWR KTFGHKCIVQ 

       190        200        210        220        230        240 
WNVFKQQLKR VHYFEEGMEA MALKSTVDLT CNDHISIFEF DIFTRLFQPW STLIRNWNHL 

       250        260        270        280        290        300 
AVTHPGYMAF LTYDQVKARL EHYRHRPGSY IFRLSCTQMG QWAIGHVTSD GSIVQTIPQN 

       310        320        330        340        350        360 
TPLYQALIQG FREGCYLYPD GRDVNPDLSS LCSPVHKGRV KVTEEQYELY CEIGSTFQLC 

       370        380        390        400        410        420 
KICTERDKDT RIQPCGHLLC QPCLTGWQKS DGHTCPYCRC DIRGTESILI EPYLPIRDKR 

       430        440        450        460        470        480 
AEEEEEDDED DDDDEEEDHE DIELVMKKLA CMKKISQEEY QIPRSSLSPP PLPPKRNSSS 

       490 
PCPSPKPQTH RSFSLGAQK 

« Hide

References

« Hide 'large scale' references
[1]NIH - Zebrafish Gene Collection (ZGC) project
Submitted (DEC-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Whole body EMBL AAI55617.1.
[2]Ensembl
Submitted (FEB-2012) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Tuebingen Ensembl ENSDARP00000005052 Ensembl ENSDARP00000099237.
[3]"The zebrafish reference genome sequence and its relationship to the human genome."
Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J. expand/collapse author list , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Tuebingen Ensembl ENSDARP00000005052 Ensembl ENSDARP00000099237.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CR391937 Genomic DNA. No translation available.
BC155616 mRNA. Translation: AAI55617.1.
RefSeqNP_001121724.2. NM_001128252.1.
UniGeneDr.118572.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING7955.ENSDARP00000099237.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSDART00000019852; ENSDARP00000005052; ENSDARG00000078217.
ENSDART00000110619; ENSDARP00000099237; ENSDARG00000078217.
GeneID565383.
KEGGdre:565383.

Organism-specific databases

ZFINZDB-GENE-080220-20. zgc:172162.

Phylogenomic databases

eggNOGNOG242251.
GeneTreeENSGT00390000011617.
HOGENOMHOG000294176.
HOVERGENHBG005255.
KOK04707.
OMATIFHRIH.
OrthoDBEOG7M0NQX.
TreeFamTF314210.

Family and domain databases

Gene3D1.10.238.10. 1 hit.
1.20.930.20. 1 hit.
3.30.40.10. 1 hit.
3.30.505.10. 1 hit.
InterProIPR024162. Adaptor_Cbl.
IPR014741. Adaptor_Cbl_EF_hand-like.
IPR003153. Adaptor_Cbl_N_hlx.
IPR014742. Adaptor_Cbl_SH2-like.
IPR024159. Cbl_PTB.
IPR011992. EF-hand-dom_pair.
IPR000980. SH2.
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
IPR017907. Znf_RING_CS.
[Graphical view]
PANTHERPTHR23007. PTHR23007. 1 hit.
PfamPF02262. Cbl_N. 1 hit.
PF02761. Cbl_N2. 1 hit.
PF02762. Cbl_N3. 1 hit.
[Graphical view]
SMARTSM00184. RING. 1 hit.
[Graphical view]
SUPFAMSSF47668. SSF47668. 1 hit.
SSF55550. SSF55550. 1 hit.
PROSITEPS51506. CBL_PTB. 1 hit.
PS00518. ZF_RING_1. 1 hit.
PS50089. ZF_RING_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio20885858.
PROA9JRD3.

Entry information

Entry nameA9JRD3_DANRE
AccessionPrimary (citable) accession number: A9JRD3
Entry history
Integrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: April 16, 2014
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)