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A9IWQ8 (A9IWQ8_BART1) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 46. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Tryptophan--tRNA ligase HAMAP-Rule MF_00140

EC=6.1.1.2 HAMAP-Rule MF_00140
Alternative name(s):
Tryptophanyl-tRNA synthetase HAMAP-Rule MF_00140
Gene names
Name:trpS HAMAP-Rule MF_00140 EMBL CAK02023.1
Ordered Locus Names:BT_1714 EMBL CAK02023.1
OrganismBartonella tribocorum (strain CIP 105476 / IBS 506) [Complete proteome] [HAMAP] EMBL CAK02023.1
Taxonomic identifier382640 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBartonellaceaeBartonella

Protein attributes

Sequence length356 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L-tryptophan + tRNA(Trp) = AMP + diphosphate + L-tryptophyl-tRNA(Trp). SAAS SAAS024109 HAMAP-Rule MF_00140

Subunit structure

Homodimer By similarity. HAMAP-Rule MF_00140

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00140.

Sequence similarities

Belongs to the class-I aminoacyl-tRNA synthetase family. RuleBase RU003489 HAMAP-Rule MF_00140

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Motif14 – 229"HIGH" region By similarity HAMAP-Rule MF_00140
Motif217 – 2215"KMSKS" region By similarity HAMAP-Rule MF_00140

Sites

Binding site2201ATP By similarity HAMAP-Rule MF_00140

Sequences

Sequence LengthMass (Da)Tools
A9IWQ8 [UniParc].

Last modified February 5, 2008. Version 1.
Checksum: 01C6EEB5F4A24FEC

FASTA35639,962
        10         20         30         40         50         60 
MDTFTPLVFS GVQPSGHLHL GNYLGALQHW VELQNSHHCL YCVVDMHALT VNPDPLILRE 

        70         80         90        100        110        120 
STRTVTAAFL AAGIDPQKHI IFNQSRVFQH AELAWIFNCV ARIGWLQRMT QFKDKAGKDR 

       130        140        150        160        170        180 
EKASLGLFAY PTLMAADILV YRATHVPVGE DQKQHVELTR DIAQKFNNDY AQRIADLNFG 

       190        200        210        220        230        240 
VSMQTDEEKR QGFFPLPEAL IGTTATRVMS LRDGTKKMSK SDPSDFSRIN LTDDADLIAK 

       250        260        270        280        290        300 
KIRKAKTDSA PLPDTLAALK ERPEVDNLLG IYAAFAKVSK EKVLLEFSGH QFSHFKTALA 

       310        320        330        340        350 
DLAVHKLAPI TEELRRLHQE SGYIDSVLHD GAKRASMLAE ENMKKIREIV GFLLNT 

« Hide

References

[1]"Genomic analysis of Bartonella identifies type IV secretion systems as host adaptability factors."
Saenz H.L., Engel P., Stoeckli M.C., Lanz C., Raddatz G., Vayssier-Taussat M., Birtles R., Schuster S.C., Dehio C.
Nat. Genet. 39:1469-1476(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CIP 105476 / IBS 506.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AM260525 Genomic DNA. Translation: CAK02023.1.
RefSeqYP_001610018.1. NC_010161.1.

3D structure databases

ProteinModelPortalA9IWQ8.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING382640.Btr_1714.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5829466.
KEGGbtr:Btr_1714.
PATRIC20551284. VBIBarTri113218_1776.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0180.
KOK01867.
OMAGWGQFKP.
OrthoDBEOG686NJQ.
ProtClustDBPRK00927.

Enzyme and pathway databases

BioCycBTRI382640:GJEK-1529-MONOMER.

Family and domain databases

Gene3D3.40.50.620. 1 hit.
HAMAPMF_00140_B. Trp_tRNA_synth_B.
InterProIPR001412. aa-tRNA-synth_I_CS.
IPR002305. aa-tRNA-synth_Ic.
IPR014729. Rossmann-like_a/b/a_fold.
IPR002306. Trp-tRNA-ligase.
IPR024109. Trp-tRNA-ligase_bac-type.
[Graphical view]
PANTHERPTHR10055. PTHR10055. 1 hit.
PfamPF00579. tRNA-synt_1b. 1 hit.
[Graphical view]
PRINTSPR01039. TRNASYNTHTRP.
TIGRFAMsTIGR00233. trpS. 1 hit.
PROSITEPS00178. AA_TRNA_LIGASE_I. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA9IWQ8_BART1
AccessionPrimary (citable) accession number: A9IWQ8
Entry history
Integrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: February 19, 2014
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)