A9IN55 (A9IN55_BART1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Pseudouridine synthase RuleBase RU003887
EC=5.4.99.- RuleBase RU003887

Gene names

Name:	rluB EMBL CAK00755.1
Ordered Locus Names:	BT_0288 EMBL CAK00755.1

Organism

Bartonella tribocorum (strain CIP 105476 / IBS 506) [Complete proteome] [HAMAP] EMBL CAK00755.1

Taxonomic identifier

382640 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bartonellaceae › Bartonella › Bartonella tribocorum

Protein attributes

Sequence length	466 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rsuA family. RuleBase RU003887 Contains 1 S4 RNA-binding domain. SAAS SAAS006145

Ontologies

Keywords
Ligand	RNA-binding SAAS SAAS006145
Molecular function	Isomerase SAAS SAAS006145 RuleBase RU003887 Lyase EMBL CAK00755.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: UniProtKB-KW lyase activity Inferred from electronic annotation. Source: UniProtKB-KW pseudouridine synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A9IN55 [UniParc]. Last modified February 5, 2008. Version 1. Checksum: 8753D8F8D82FEC36	FASTA	466	52,494
	10 20 30 40 50 60 MNENNESERI AKRLARAGVA SRRDAEMMIV AGRVSVNGTV VTTPAFNVSR SDVIKVDGKP 70 80 90 100 110 120 LSPIERTRLW LYHKPAGLVT TNRDPEGRPT VFSHLPKGMP RVVSVGRLDI NTEGLLLLTN 130 140 150 160 170 180 DGGLARVLEL PVTGWVRKYR VRAHGRVKQS ALDNLKNGIA INGIFYGSIE ASIEREQGAN 190 200 210 220 230 240 IWLSIALREG KNREIKNVLG ALGLSVNRLI RVSYGPFHLS DLKEGAVQEL KGRMLRDQLG 250 260 270 280 290 300 ERLIMQANAD FDAPILKPFS NSPVIAEKQS QKDVSVANDG WVFSSERVIR RRSNDGSVEH 310 320 330 340 350 360 DRARLRAKSH ENMNKGKSEE GKAERFLPRS RRANVWMAPG ARPQSARRKP SYNEEKSHDH 370 380 390 400 410 420 KGDTADKKSF YRGKEKRQDN HLQKGKKGSF VQKHGKTSYE ETHTFGKKDR FLKDKEKMIK 430 440 450 460 GGRDERSFER KDKIKSFSGA MKKSKPHRDG AKTSKRFGGP RADHRR

References

[1]

"Genomic analysis of Bartonella identifies type IV secretion systems as host adaptability factors." Saenz H.L., Engel P., Stoeckli M.C., Lanz C., Raddatz G., Vayssier-Taussat M., Birtles R., Schuster S.C., Dehio C. Nat. Genet. 39:1469-1476(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CIP 105476 / IBS 506.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM260525 Genomic DNA. Translation: CAK00755.1.
RefSeq	YP_001608750.1. NC_010161.1.
3D structure databases
ProteinModelPortal	A9IN55.
ModBase	Search...
Protein-protein interaction databases
STRING	382640.Btr_0288.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5829594.
KEGG	btr:Btr_0288.
PATRIC	20548308. VBIBarTri113218_0315.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1187.
KO	K06178.
OMA	RDAEMMI.
ProtClustDB	CLSK926987.
Enzyme and pathway databases
BioCyc	BTRI382640:GJEK-252-MONOMER.
Family and domain databases
Gene3D	3.10.290.10. 1 hit.
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR000748. PsdUridine_synth_RsuA/RluB/E/F. IPR018496. PsdUridine_synth_RsuA/RluB_CS. IPR006145. PsdUridine_synth_RsuA/RluD. IPR002942. S4_RNA-bd. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. PF01479. S4. 1 hit. [Graphical view]
SMART	SM00363. S4. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
TIGRFAMs	TIGR00093. TIGR00093. 1 hit.
PROSITE	PS01149. PSI_RSU. 1 hit. PS50889. S4. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A9IN55_BART1

Accession

Primary (citable) accession number: A9IN55

Entry history

Integrated into UniProtKB/TrEMBL:	February 5, 2008
Last sequence update:	February 5, 2008
Last modified:	May 1, 2013
This is version 42 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)