A9ILQ1 (A9ILQ1_BORPD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Ribonuclease PH HAMAP-Rule MF_00564
Short name=RNase PH HAMAP-Rule MF_00564
EC=2.7.7.56 HAMAP-Rule MF_00564

Alternative name(s):
tRNA nucleotidyltransferase HAMAP-Rule MF_00564

Gene names

Name:	rph HAMAP-Rule MF_00564
Ordered Locus Names:	Bpet2268

Organism

Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) [Complete proteome] [HAMAP]

Taxonomic identifier

340100 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Alcaligenaceae › Bordetella › Bordetella petrii

Protein attributes

Sequence length	246 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates By similarity. HAMAP-Rule MF_00564 SAAS SAAS018336
Catalytic activity	tRNA(n+1) + phosphate = tRNA(n) + a nucleoside diphosphate. HAMAP-Rule MF_00564 SAAS SAAS018336
Sequence similarities	Belongs to the RNase PH family. HAMAP-Rule MF_00564

Ontologies

Keywords
Biological process	tRNA processing HAMAP-Rule MF_00564 SAAS SAAS018336
Molecular function	Nucleotidyltransferase HAMAP-Rule MF_00564 SAAS SAAS018336 EMBL CAP42611.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	tRNA processing Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	tRNA binding Inferred from electronic annotation. Source: InterPro tRNA nucleotidyltransferase activity Inferred from electronic annotation. Source: EC tRNA-specific ribonuclease activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A9ILQ1 [UniParc]. Last modified February 5, 2008. Version 1. Checksum: 53ACB1E08D17C0A9	FASTA	246	25,915
	10 20 30 40 50 60 MSSSTASAVA RPSGRAVDQL RPFSLQRGYT RYAEGSVLVR AGNTHVLCTA SVLDKVPPFL 70 80 90 100 110 120 KGRGEGWVTA EYGMLPRATH TRGDREAARG KQSGRTQEIQ RLIGRSLRAV FDMKALGERT 130 140 150 160 170 180 LHLDCDVLQA DGGTRCASIT GAWVAAADAV ALLMQRGDLA ANPIRDAVAA VSVGMVAGRP 190 200 210 220 230 240 VLDLDYQEDS ACDADVNVVM TGAGAFVEVQ GTGEGATFAR SELDAMLGLA EQGIAQLVRA QREALA

References

[1]

"The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae." Gross R., Guzman C.A., Sebaihia M., Martins Dos Santos V.A., Pieper D.H., Koebnik R., Lechner M., Bartels D., Buhrmester J., Choudhuri J.V., Ebensen T., Gaigalat L., Herrmann S., Khachane A.N., Larisch C., Link S., Linke B., Meyer F. , Mormann S., Nakunst D., Rueckert C., Schneiker-Bekel S., Schulze K., Vorhoelter F.J., Yevsa T., Engle J.T., Goldman W.E., Puehler A., Goebel U.B., Goesmann A., Bloecker H., Kaiser O., Martinez-Arias R. BMC Genomics 9:449-449(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-461 / DSM 12804 / CCUG 43448.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM902716 Genomic DNA. Translation: CAP42611.1.
RefSeq	YP_001630879.1. NC_010170.1.
3D structure databases
ProteinModelPortal	A9ILQ1.
SMR	A9ILQ1. Positions 11-246.
ModBase	Search...
Protein-protein interaction databases
STRING	340100.Bpet2268.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CAP42611; CAP42611; Bpet2268.
GeneID	5817624.
KEGG	bpt:Bpet2268.
PATRIC	21166004. VBIBorPet31633_2264.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0689.
HOGENOM	HOG000229516.
KO	K00989.
OMA	MLPRATG.
ProtClustDB	PRK00173.
Enzyme and pathway databases
BioCyc	BPET340100:GJBO-2296-MONOMER.
Family and domain databases
Gene3D	3.30.230.70. 1 hit.
HAMAP	MF_00564. RNase_PH.
InterPro	IPR001247. ExoRNase_PH_dom1. IPR015847. ExoRNase_PH_dom2. IPR027408. PNPase/RNase_PH_dom. IPR020568. Ribosomal_S5_D2-typ_fold. IPR002381. RNase_PH_bac-type. IPR018336. RNase_PH_CS. [Graphical view]
Pfam	PF01138. RNase_PH. 1 hit. PF03725. RNase_PH_C. 1 hit. [Graphical view]
SUPFAM	SSF55666. 3_ExoRNase. 1 hit. SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit.
TIGRFAMs	TIGR01966. RNasePH. 1 hit.
PROSITE	PS01277. RIBONUCLEASE_PH. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A9ILQ1_BORPD

Accession

Primary (citable) accession number: A9ILQ1

Entry history

Integrated into UniProtKB/TrEMBL:	February 5, 2008
Last sequence update:	February 5, 2008
Last modified:	May 29, 2013
This is version 38 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)