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A9ILQ1 (A9ILQ1_BORPD) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 43. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ribonuclease PH HAMAP-Rule MF_00564

Short name=RNase PH HAMAP-Rule MF_00564
EC=2.7.7.56 HAMAP-Rule MF_00564
Alternative name(s):
tRNA nucleotidyltransferase HAMAP-Rule MF_00564
Gene names
Name:rph HAMAP-Rule MF_00564 EMBL CAP42611.1
Ordered Locus Names:Bpet2268 EMBL CAP42611.1
OrganismBordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) [Complete proteome] [HAMAP]
Taxonomic identifier340100 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesAlcaligenaceaeBordetella

Protein attributes

Sequence length246 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates By similarity. HAMAP-Rule MF_00564 SAAS SAAS002381

Catalytic activity

tRNA(n+1) + phosphate = tRNA(n) + a nucleoside diphosphate. HAMAP-Rule MF_00564 SAAS SAAS002381

Sequence similarities

Belongs to the RNase PH family. HAMAP-Rule MF_00564

Sequences

Sequence LengthMass (Da)Tools
A9ILQ1 [UniParc].

Last modified February 5, 2008. Version 1.
Checksum: 53ACB1E08D17C0A9

FASTA24625,915
        10         20         30         40         50         60 
MSSSTASAVA RPSGRAVDQL RPFSLQRGYT RYAEGSVLVR AGNTHVLCTA SVLDKVPPFL 

        70         80         90        100        110        120 
KGRGEGWVTA EYGMLPRATH TRGDREAARG KQSGRTQEIQ RLIGRSLRAV FDMKALGERT 

       130        140        150        160        170        180 
LHLDCDVLQA DGGTRCASIT GAWVAAADAV ALLMQRGDLA ANPIRDAVAA VSVGMVAGRP 

       190        200        210        220        230        240 
VLDLDYQEDS ACDADVNVVM TGAGAFVEVQ GTGEGATFAR SELDAMLGLA EQGIAQLVRA 


QREALA 

« Hide

References

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AM902716 Genomic DNA. Translation: CAP42611.1.
RefSeqYP_001630879.1. NC_010170.1.

3D structure databases

ProteinModelPortalA9ILQ1.
SMRA9ILQ1. Positions 11-246.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING340100.Bpet2268.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAP42611; CAP42611; Bpet2268.
GeneID5817624.
KEGGbpt:Bpet2268.
PATRIC21166004. VBIBorPet31633_2264.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0689.
HOGENOMHOG000229516.
KOK00989.
OMAKGQGWVT.
OrthoDBEOG6CZQQP.
ProtClustDBPRK00173.

Enzyme and pathway databases

BioCycBPET340100:GJBO-2296-MONOMER.

Family and domain databases

Gene3D3.30.230.70. 1 hit.
HAMAPMF_00564. RNase_PH.
InterProIPR001247. ExoRNase_PH_dom1.
IPR015847. ExoRNase_PH_dom2.
IPR027408. PNPase/RNase_PH_dom.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR002381. RNase_PH_bac-type.
IPR018336. RNase_PH_CS.
[Graphical view]
PfamPF01138. RNase_PH. 1 hit.
PF03725. RNase_PH_C. 1 hit.
[Graphical view]
SUPFAMSSF54211. SSF54211. 1 hit.
SSF55666. SSF55666. 1 hit.
TIGRFAMsTIGR01966. RNasePH. 1 hit.
PROSITEPS01277. RIBONUCLEASE_PH. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA9ILQ1_BORPD
AccessionPrimary (citable) accession number: A9ILQ1
Entry history
Integrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: April 16, 2014
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)