Reviewed,
UniProtKB/Swiss-Prot A9IIP6 (KDSA_BORPD)
Last modified
November 3, 2009.
Version 17.
History...
Clusters with 100%,
90%,
50% identity |
Documents (2) |
Third-party data |
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Names and origin
| Protein names | Recommended name: 2-dehydro-3-deoxyphosphooctonate aldolase EC=2.5.1.55 Alternative name(s): Phospho-2-dehydro-3-deoxyoctonate aldolase 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase KDO-8-phosphate synthetase Short name=KDO 8-P synthase Short name=KDOPS | ||||
| Gene names |
| ||||
| Organism | Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) [Complete proteome] [HAMAP] | ||||
| Taxonomic identifier | 340100 [NCBI] | ||||
| Taxonomic lineage | Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Alcaligenaceae › Bordetella |
Protein attributes
| Sequence length | 284 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is not processed. |
| Protein existence | Inferred from homology. |
General annotation (Comments)
| Catalytic activity | Phosphoenolpyruvate + D-arabinose 5-phosphate + H2O = 2-dehydro-3-deoxy-D-octonate 8-phosphate + phosphate. HAMAP MF_00056 |
| Pathway | Carbohydrate biosynthesis; 3-deoxy-D-manno-octulosonate biosynthesis; 3-deoxy-D-manno-octulosonate from D-ribulose 5-phosphate: step 2/3. HAMAP MF_00056 Bacterial outer membrane biogenesis; lipopolysaccharide biosynthesis. HAMAP MF_00056 |
| Subcellular location | Cytoplasm By similarity. |
| Sequence similarities | Belongs to the kdsA family. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Lipopolysaccharide biosynthesis |
| Cellular component | Cytoplasm |
| Molecular function | Transferase |
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Biological process | keto-3-deoxy-D-manno-octulosonic acid biosynthetic process Inferred from electronic annotation. Source: HAMAP |
| Cellular component | cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular function | 3-deoxy-8-phosphooctulonate synthase activity Inferred from electronic annotation. Source: HAMAP |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||
Molecule processing | |||||||
|---|---|---|---|---|---|---|---|
| Chain | 1 – 284 | 284 | 2-dehydro-3-deoxyphosphooctonate aldolase HAMAP MF_00056 | PRO_1000091798 | |||
Sequences
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References
| [1] | "The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae." Gross R., Guzman C.A., Sebaihia M., Martin dos Santos V.A.P., Pieper D.H., Koebnik R., Lechner M., Bartels D., Buhrmester J., Choudhuri J.V., Ebensen T., Gaigalat L., Herrmann S., Khachane A.N., Larisch C., Link S., Linke B., Meyer F. Martinez-Arias R.BMC Genomics 9:449-449(2008) [PubMed: 18826580] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
Cross-references
Sequence databases | |
|---|---|
| AM902716 Genomic DNA. Translation: CAP42140.1. | |
| RefSeq | YP_001630409.1. |
3D structure databases | |
| ModBase | Search... |
Genome annotation databases | |
| GeneID | 5816959. |
| GenomeReviews | Gene locus Bpet1801 in contig AM902716_GR. |
| KEGG | bpt:Bpet1801. |
Organism-specific databases | |
| CMR | Search... |
Phylogenomic databases | |
| OMA | PDPSKAM. |
Family and domain databases | |
| HAMAP | MF_00056. [Tree] |
| InterPro | IPR013785. Aldolase_TIM. IPR006218. DAHP1/KDSA. IPR006269. KDO8P_synthase. [Graphical view] |
| Gene3D | G3DSA:3.20.20.70. Aldolase_TIM. 1 hit. |
| PANTHER | PTHR21057:SF2. KDO8P_synthase. 1 hit. |
| Pfam | PF00793. DAHP_synth_1. 1 hit. [Graphical view] |
| TIGRFAMs | TIGR01362. KDO8P_synth. 1 hit. |
| ProtoNet | Search... |
Entry information
| Entry name | KDSA_BORPD | ||||||||
| Accession | Primary (citable) accession number: A9IIP6 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes) | ||||||||
Relevant documents
| PATHWAY comments Index of metabolic and biosynthesis pathways |
| SIMILARITY comments Index of protein domains and families |

Clusters with


