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A9HIF1 (A9HIF1_GLUDA) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 56. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
UvrABC system protein C HAMAP-Rule MF_00203

Short name=Protein UvrC HAMAP-Rule MF_00203
Alternative name(s):
Excinuclease ABC subunit C HAMAP-Rule MF_00203
Gene names
Name:uvrC HAMAP-Rule MF_00203 EMBL CAP55761.1
Ordered Locus Names:GDI1818 EMBL CAP55761.1
OrganismGluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) [Complete proteome] [HAMAP] EMBL CAP55761.1
Taxonomic identifier272568 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhodospirillalesAcetobacteraceaeGluconacetobacter

Protein attributes

Sequence length637 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision By similarity. HAMAP-Rule MF_00203 SAAS SAAS001162

Subunit structure

Interacts with UvrB in an incision complex By similarity. HAMAP-Rule MF_00203 SAAS SAAS001162

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00203 SAAS SAAS001162.

Sequence similarities

Belongs to the UvrC family. HAMAP-Rule MF_00203

Contains 1 GIY-YIG domain. HAMAP-Rule MF_00203

Contains 1 UVR domain. HAMAP-Rule MF_00203

Contains GIY-YIG domain. SAAS SAAS001162

Contains UVR domain. SAAS SAAS001162

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Domain34 – 11279GIY-YIG By similarity HAMAP-Rule MF_00203
Domain222 – 25736UVR By similarity HAMAP-Rule MF_00203

Sequences

Sequence LengthMass (Da)Tools
A9HIF1 [UniParc].

Last modified February 5, 2008. Version 1.
Checksum: DC0C612F08D9C545

FASTA63770,639
        10         20         30         40         50         60 
MDERTCRLMD ADVVPASSVK GVEAILLALQ TMPLSPGVYR MLGEKGEVLY VGKARILKRR 

        70         80         90        100        110        120 
VTSYTHLSKL PERLRRMVSE TVTMEIVTTH TEAEALLLEA NYIKRMKPRF NILLRDDKSY 

       130        140        150        160        170        180 
PWIMLTDGAE FPQVTKHRGK PVKGASYWGP FASAWAVNQT LNLIQRVFLL RTCSDSVFAS 

       190        200        210        220        230        240 
RTRPCLLFQI KRCSAPCVAR IGQAEYAHLV EQARAFLSGQ RGGIREELVR EMEAAAASLE 

       250        260        270        280        290        300 
FERAATIRDR IRGFAAMQDS SVINPASLDD ADIVAIAQAA GHSCIQVFFI RGGRNNGNRA 

       310        320        330        340        350        360 
FFPAHARDEA APDIVGAFLA QFYDDKPPPA QILLNCEIAE HDLMADALGI KRGRKVEILV 

       370        380        390        400        410        420 
PKRGEKRAVV EHAETNAREA LERKLAESTA QARLLEGMAD LFGLDAPPRR IEIYDNSHIM 

       430        440        450        460        470        480 
GTNAYGVMVV AGPEGFDKRS YRKFSIRGPI TPGDDFAMMR EVLERRFSRA LRERDDSAGA 

       490        500        510        520        530        540 
SSPADWPDIV LIDGGAGQYS AVRAVLDELG VTDVTLVAIA KGPDRDAGRE WFHMADRPPF 

       550        560        570        580        590        600 
QLPPRDPVLY YLQRLRDEAH RFAITTHRAG RSKALVKSEL DEIPGVGAAR KRALLNQFGS 

       610        620        630 
ARGVRQAGLA ELEATQGINR ETARVVYGHF HPGWTGA 

« Hide

References

[1]"Gluconacetobacter diazotrophicus Pal5 complete genome."
Bertalan M., Baldani I.J., Ferreira P.
Submitted (SEP-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 49037 / DSM 5601 / PAl5.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AM889285 Genomic DNA. Translation: CAP55761.1.
RefSeqYP_001602063.1. NC_010125.1.

3D structure databases

ProteinModelPortalA9HIF1.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAP55761; CAP55761; GDI1818.
GeneID5789412.
KEGGgdi:GDI_1818.
PATRIC22059182. VBIGluDia122154_1753.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK03703.
OMAQKLFPIR.
OrthoDBEOG6K13R9.
ProtClustDBPRK00558.

Enzyme and pathway databases

BioCycGDIA272568:GJPS-1852-MONOMER.

Family and domain databases

Gene3D3.40.1440.10. 1 hit.
4.10.860.10. 1 hit.
HAMAPMF_00203. UvrC.
InterProIPR027299. GIY-YIG_dom.
IPR000305. GIY-YIG_SF.
IPR003583. Hlx-hairpin-Hlx_DNA-bd_motif.
IPR010994. RuvA_2-like.
IPR001943. UVR_dom.
IPR004791. UvrC.
IPR001162. UvrC_homol_region.
[Graphical view]
PfamPF01541. GIY-YIG. 1 hit.
PF02151. UVR. 1 hit.
PF08459. UvrC_HhH_N. 1 hit.
[Graphical view]
SMARTSM00465. GIYc. 1 hit.
SM00278. HhH1. 2 hits.
[Graphical view]
SUPFAMSSF46600. SSF46600. 1 hit.
SSF47781. SSF47781. 1 hit.
SSF82771. SSF82771. 1 hit.
TIGRFAMsTIGR00194. uvrC. 1 hit.
PROSITEPS50164. GIY_YIG. 1 hit.
PS50151. UVR. 1 hit.
PS50165. UVRC. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA9HIF1_GLUDA
AccessionPrimary (citable) accession number: A9HIF1
Entry history
Integrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: April 16, 2014
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)