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A9H3Q8

- RL23_GLUDA

UniProt

A9H3Q8 - RL23_GLUDA

Protein

50S ribosomal protein L23

Gene

rplW

Organism
Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
  1. Functioni

    One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.UniRule annotation

    GO - Molecular functioni

    1. nucleotide binding Source: InterPro
    2. rRNA binding Source: UniProtKB-HAMAP
    3. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciGDIA272568:GJPS-3461-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L23UniRule annotation
    Gene namesi
    Name:rplWUniRule annotation
    Ordered Locus Names:GDI3402, Gdia_2968
    OrganismiGluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5)
    Taxonomic identifieri272568 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodospirillalesAcetobacteraceaeGluconacetobacter
    ProteomesiUP000000736: Chromosome, UP000001176: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 989850S ribosomal protein L23PRO_1000087219Add
    BLAST

    Proteomic databases

    PRIDEiA9H3Q8.

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome.UniRule annotation

    Protein-protein interaction databases

    STRINGi272568.GDI_3402.

    Structurei

    3D structure databases

    ProteinModelPortaliA9H3Q8.
    SMRiA9H3Q8. Positions 1-91.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L23P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0089.
    HOGENOMiHOG000231364.
    KOiK02892.
    OMAiFGRRSDW.
    OrthoDBiEOG6HTP4P.

    Family and domain databases

    Gene3Di3.30.70.330. 1 hit.
    HAMAPiMF_01369_B. Ribosomal_L23_B.
    InterProiIPR012677. Nucleotide-bd_a/b_plait.
    IPR012678. Ribosomal_L23/L15e_core_dom.
    IPR013025. Ribosomal_L25/23.
    [Graphical view]
    PfamiPF00276. Ribosomal_L23. 1 hit.
    [Graphical view]
    SUPFAMiSSF54189. SSF54189. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    A9H3Q8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSREAMYDIV RAPLITEKAT ALSEKNQVAF KVAIDATKPE IKVAVETLFG   50
    VKVLGVNTLV QKGKTKRFKG RPGQRSDVKK AFVQLAEGQS IDLTAKLV 98
    Length:98
    Mass (Da):10,716
    Last modified:February 5, 2008 - v1
    Checksum:i21F9D4ED56DD1E84
    GO

    Sequence cautioni

    The sequence ACI52698.1 differs from that shown. Reason: Erroneous initiation.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM889285 Genomic DNA. Translation: CAP57345.1.
    CP001189 Genomic DNA. Translation: ACI52698.1. Different initiation.
    RefSeqiYP_001603633.1. NC_010125.1.
    YP_002277313.1. NC_011365.1.

    Genome annotation databases

    EnsemblBacteriaiACI52698; ACI52698; Gdia_2968.
    CAP57345; CAP57345; GDI3402.
    GeneIDi5790823.
    6976402.
    KEGGigdi:GDI_3402.
    gdj:Gdia_2968.
    PATRICi22054340. VBIGluDia203729_2944.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM889285 Genomic DNA. Translation: CAP57345.1 .
    CP001189 Genomic DNA. Translation: ACI52698.1 . Different initiation.
    RefSeqi YP_001603633.1. NC_010125.1.
    YP_002277313.1. NC_011365.1.

    3D structure databases

    ProteinModelPortali A9H3Q8.
    SMRi A9H3Q8. Positions 1-91.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 272568.GDI_3402.

    Proteomic databases

    PRIDEi A9H3Q8.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACI52698 ; ACI52698 ; Gdia_2968 .
    CAP57345 ; CAP57345 ; GDI3402 .
    GeneIDi 5790823.
    6976402.
    KEGGi gdi:GDI_3402.
    gdj:Gdia_2968.
    PATRICi 22054340. VBIGluDia203729_2944.

    Phylogenomic databases

    eggNOGi COG0089.
    HOGENOMi HOG000231364.
    KOi K02892.
    OMAi FGRRSDW.
    OrthoDBi EOG6HTP4P.

    Enzyme and pathway databases

    BioCyci GDIA272568:GJPS-3461-MONOMER.

    Family and domain databases

    Gene3Di 3.30.70.330. 1 hit.
    HAMAPi MF_01369_B. Ribosomal_L23_B.
    InterProi IPR012677. Nucleotide-bd_a/b_plait.
    IPR012678. Ribosomal_L23/L15e_core_dom.
    IPR013025. Ribosomal_L25/23.
    [Graphical view ]
    Pfami PF00276. Ribosomal_L23. 1 hit.
    [Graphical view ]
    SUPFAMi SSF54189. SSF54189. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of the sugarcane nitrogen-fixing endophyte Gluconacetobacter diazotrophicus Pal5."
      Bertalan M., Albano R., de Padua V., Rouws L., Rojas C., Hemerly A., Teixeira K., Schwab S., Araujo J., Oliveira A., Franca L., Magalhaes V., Alqueres S., Cardoso A., Almeida W., Loureiro M.M., Nogueira E., Cidade D.
      , Oliveira D., Simao T., Macedo J., Valadao A., Dreschsel M., Freitas F., Vidal M., Guedes H., Rodrigues E., Meneses C., Brioso P., Pozzer L., Figueiredo D., Montano H., Junior J., de Souza Filho G., Martin Quintana Flores V., Ferreira B., Branco A., Gonzalez P., Guillobel H., Lemos M., Seibel L., Macedo J., Alves-Ferreira M., Sachetto-Martins G., Coelho A., Santos E., Amaral G., Neves A., Pacheco A.B., Carvalho D., Lery L., Bisch P., Rossle S.C., Urmenyi T., Rael Pereira A., Silva R., Rondinelli E., von Kruger W., Martins O., Baldani J.I., Ferreira P.C.
      BMC Genomics 10:450-450(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 49037 / DSM 5601 / PAl5.
    2. "Two genome sequences of the same bacterial strain, Gluconacetobacter diazotrophicus PAl 5, suggest a new standard in genome sequence submission."
      Giongo A., Tyler H.L., Zipperer U.N., Triplett E.W.
      Stand. Genomic Sci. 2:309-317(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 49037 / DSM 5601 / PAl5.

    Entry informationi

    Entry nameiRL23_GLUDA
    AccessioniPrimary (citable) accession number: A9H3Q8
    Secondary accession number(s): B5ZIG5
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 20, 2008
    Last sequence update: February 5, 2008
    Last modified: October 1, 2014
    This is version 44 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Ribosomal proteins
      Ribosomal proteins families and list of entries
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3