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A9H3Q8

- RL23_GLUDA

UniProt

A9H3Q8 - RL23_GLUDA

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Protein

50S ribosomal protein L23

Gene
rplW, GDI3402, Gdia_2968
Organism
Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome By similarity.UniRule annotation

GO - Molecular functioni

  1. nucleotide binding Source: InterPro
  2. rRNA binding Source: UniProtKB-HAMAP
  3. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciGDIA272568:GJPS-3461-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L23
Gene namesi
Name:rplW
Ordered Locus Names:GDI3402, Gdia_2968
OrganismiGluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5)
Taxonomic identifieri272568 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodospirillalesAcetobacteraceaeGluconacetobacter
ProteomesiUP000000736: Chromosome, UP000001176: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 989850S ribosomal protein L23UniRule annotationPRO_1000087219Add
BLAST

Proteomic databases

PRIDEiA9H3Q8.

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome By similarity.

Protein-protein interaction databases

STRINGi272568.GDI_3402.

Structurei

3D structure databases

ProteinModelPortaliA9H3Q8.
SMRiA9H3Q8. Positions 1-91.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0089.
HOGENOMiHOG000231364.
KOiK02892.
OMAiFGRRSDW.
OrthoDBiEOG6HTP4P.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
HAMAPiMF_01369_B. Ribosomal_L23_B.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR013025. Ribosomal_L25/23.
[Graphical view]
PfamiPF00276. Ribosomal_L23. 1 hit.
[Graphical view]
SUPFAMiSSF54189. SSF54189. 1 hit.

Sequencei

Sequence statusi: Complete.

A9H3Q8-1 [UniParc]FASTAAdd to Basket

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MSREAMYDIV RAPLITEKAT ALSEKNQVAF KVAIDATKPE IKVAVETLFG   50
VKVLGVNTLV QKGKTKRFKG RPGQRSDVKK AFVQLAEGQS IDLTAKLV 98
Length:98
Mass (Da):10,716
Last modified:February 5, 2008 - v1
Checksum:i21F9D4ED56DD1E84
GO

Sequence cautioni

The sequence ACI52698.1 differs from that shown. Reason: Erroneous initiation.

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AM889285 Genomic DNA. Translation: CAP57345.1.
CP001189 Genomic DNA. Translation: ACI52698.1. Different initiation.
RefSeqiYP_001603633.1. NC_010125.1.
YP_002277313.1. NC_011365.1.

Genome annotation databases

EnsemblBacteriaiACI52698; ACI52698; Gdia_2968.
CAP57345; CAP57345; GDI3402.
GeneIDi5790823.
6976402.
KEGGigdi:GDI_3402.
gdj:Gdia_2968.
PATRICi22054340. VBIGluDia203729_2944.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AM889285 Genomic DNA. Translation: CAP57345.1 .
CP001189 Genomic DNA. Translation: ACI52698.1 . Different initiation.
RefSeqi YP_001603633.1. NC_010125.1.
YP_002277313.1. NC_011365.1.

3D structure databases

ProteinModelPortali A9H3Q8.
SMRi A9H3Q8. Positions 1-91.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 272568.GDI_3402.

Proteomic databases

PRIDEi A9H3Q8.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACI52698 ; ACI52698 ; Gdia_2968 .
CAP57345 ; CAP57345 ; GDI3402 .
GeneIDi 5790823.
6976402.
KEGGi gdi:GDI_3402.
gdj:Gdia_2968.
PATRICi 22054340. VBIGluDia203729_2944.

Phylogenomic databases

eggNOGi COG0089.
HOGENOMi HOG000231364.
KOi K02892.
OMAi FGRRSDW.
OrthoDBi EOG6HTP4P.

Enzyme and pathway databases

BioCyci GDIA272568:GJPS-3461-MONOMER.

Family and domain databases

Gene3Di 3.30.70.330. 1 hit.
HAMAPi MF_01369_B. Ribosomal_L23_B.
InterProi IPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR013025. Ribosomal_L25/23.
[Graphical view ]
Pfami PF00276. Ribosomal_L23. 1 hit.
[Graphical view ]
SUPFAMi SSF54189. SSF54189. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of the sugarcane nitrogen-fixing endophyte Gluconacetobacter diazotrophicus Pal5."
    Bertalan M., Albano R., de Padua V., Rouws L., Rojas C., Hemerly A., Teixeira K., Schwab S., Araujo J., Oliveira A., Franca L., Magalhaes V., Alqueres S., Cardoso A., Almeida W., Loureiro M.M., Nogueira E., Cidade D.
    , Oliveira D., Simao T., Macedo J., Valadao A., Dreschsel M., Freitas F., Vidal M., Guedes H., Rodrigues E., Meneses C., Brioso P., Pozzer L., Figueiredo D., Montano H., Junior J., de Souza Filho G., Martin Quintana Flores V., Ferreira B., Branco A., Gonzalez P., Guillobel H., Lemos M., Seibel L., Macedo J., Alves-Ferreira M., Sachetto-Martins G., Coelho A., Santos E., Amaral G., Neves A., Pacheco A.B., Carvalho D., Lery L., Bisch P., Rossle S.C., Urmenyi T., Rael Pereira A., Silva R., Rondinelli E., von Kruger W., Martins O., Baldani J.I., Ferreira P.C.
    BMC Genomics 10:450-450(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 49037 / DSM 5601 / PAl5.
  2. "Two genome sequences of the same bacterial strain, Gluconacetobacter diazotrophicus PAl 5, suggest a new standard in genome sequence submission."
    Giongo A., Tyler H.L., Zipperer U.N., Triplett E.W.
    Stand. Genomic Sci. 2:309-317(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 49037 / DSM 5601 / PAl5.

Entry informationi

Entry nameiRL23_GLUDA
AccessioniPrimary (citable) accession number: A9H3Q8
Secondary accession number(s): B5ZIG5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: February 5, 2008
Last modified: May 14, 2014
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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