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A9H268 (A9H268_GLUDA) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 37. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Putative DNA ligase-like protein EMBL CAP54112.1
Gene names
Ordered Locus Names:GDI0169 EMBL CAP54112.1
OrganismGluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) [Complete proteome] [HAMAP] EMBL CAP54112.1
Taxonomic identifier272568 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhodospirillales › Acetobacteraceae › Gluconacetobacter ›

Protein attributes

Sequence length856 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL CAP54112.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A9H268 [UniParc].

Last modified February 5, 2008. Version 1.
Checksum: C1CDD9863C029CAF

FASTA85692,556
        10         20         30         40         50         60 
MALDTYRNKR DFEATPEPEG AEAAEKPDTG AGHLFVIQKH AARRLHYDLR LEMDGVLKSW 

        70         80         90        100        110        120 
AVTRGPSLNP GDKRLAVQVE DHPLDYGTFE GTIPKGQYGG GTVMLWDKGT WTPLHDPVRG 

       130        140        150        160        170        180 
LAKGHLDFEL RGEKLHGRWN LVRMDGHREG THENWLLIKA ADSDARSKND ADILEERPES 

       190        200        210        220        230        240 
VKTGRAMDDI AAGAPGKDKV GKAAAQKAVT KKAAIPKDAP QADAAATGAA PCAGAKPGPL 

       250        260        270        280        290        300 
PSFVEPELAT LVRAAPTGPQ WLHEVKFDGY RLLARIEAGR VVLLTRTGLD WTARFGDQIS 

       310        320        330        340        350        360 
AALASLPVRA ALIDGELVVE TAGGTSDFSA LQADLSAGRT DRFIFYVFDL LHLDGYDLRD 

       370        380        390        400        410        420 
ATLEARKGAL HDLVPDDAAR LRFSGHFDEA GGQVLRHACR LGLEGIVSKQ RDAPYRSGRG 

       430        440        450        460        470        480 
RDWVKSKCVA RQEFVIGGYV PSTANRGAVG SLVLGVQENG RLVHVGRVGT GFTAATAADL 

       490        500        510        520        530        540 
FRRLQPLDVP DSPFAAALTA RERKGVRYVR PDCVAEVEFR AWTADGHLRH AAFLGQREDK 

       550        560        570        580        590        600 
PAADIVREVE APDPVSSGPS SKPVKPVSPE PAPARPARTL THPDRSYWPD AGVTKQDLAD 

       610        620        630        640        650        660 
YYAAIWPRMA PFITDRALAL LRCPNGIAGP RFFQKNLWKG AGGHLVPLQD PEGEAGTPLI 

       670        680        690        700        710        720 
GLHDRDGLID LVQAAALEIH PWGASVQAWS QPDMIVMDLD PGDGVPWSMV IEAAREIRAR 

       730        740        750        760        770        780 
LERSGLASFV KTTGGKGLHV VAPLKPGADW AVVKAFTRSM AQAMVSDSPQ RYVATITKSR 

       790        800        810        820        830        840 
RQGRILVDYL RNQRGATAVA PYSPRARPGA PVAMPLAWNE LGPDIGPAHF TIGTIGARLA 

       850 
VADPWAEIRD AARPLR

« Hide

References

[1]"Gluconacetobacter diazotrophicus Pal5 complete genome."
Bertalan M., Baldani I.J., Ferreira P.
Submitted (SEP-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 49037 / DSM 5601 / PAl5.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AM889285 Genomic DNA. Translation: CAP54112.1.
RefSeqYP_001600459.1. NC_010125.1.

3D structure databases

ProteinModelPortalA9H268.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAP54112; CAP54112; GDI0169.
GeneID5792297.
KEGGgdi:GDI_0169.
PATRIC22055994. VBIGluDia122154_0188.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.
OMALKSDPWA.
ProtClustDBCLSK2402650.

Enzyme and pathway databases

BioCycGDIA272568:GJPS-175-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA9H268_GLUDA
AccessionPrimary (citable) accession number: A9H268
Entry history
Integrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: May 1, 2013
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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