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Protein
Submitted name:

Gluconacetobacter diazotrophicus PAl 5 complete genome

Gene

GDI0169

Organism
Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciGDIA272568:GJPS-175-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Gluconacetobacter diazotrophicus PAl 5 complete genomeImported
Gene namesi
Ordered Locus Names:GDI0169Imported
OrganismiGluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5)Imported
Taxonomic identifieri272568 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodospirillalesAcetobacteraceaeGluconacetobacter
ProteomesiUP000001176 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi272568.GDI_0169.

Structurei

3D structure databases

ProteinModelPortaliA9H268.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A9H268-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALDTYRNKR DFEATPEPEG AEAAEKPDTG AGHLFVIQKH AARRLHYDLR
60 70 80 90 100
LEMDGVLKSW AVTRGPSLNP GDKRLAVQVE DHPLDYGTFE GTIPKGQYGG
110 120 130 140 150
GTVMLWDKGT WTPLHDPVRG LAKGHLDFEL RGEKLHGRWN LVRMDGHREG
160 170 180 190 200
THENWLLIKA ADSDARSKND ADILEERPES VKTGRAMDDI AAGAPGKDKV
210 220 230 240 250
GKAAAQKAVT KKAAIPKDAP QADAAATGAA PCAGAKPGPL PSFVEPELAT
260 270 280 290 300
LVRAAPTGPQ WLHEVKFDGY RLLARIEAGR VVLLTRTGLD WTARFGDQIS
310 320 330 340 350
AALASLPVRA ALIDGELVVE TAGGTSDFSA LQADLSAGRT DRFIFYVFDL
360 370 380 390 400
LHLDGYDLRD ATLEARKGAL HDLVPDDAAR LRFSGHFDEA GGQVLRHACR
410 420 430 440 450
LGLEGIVSKQ RDAPYRSGRG RDWVKSKCVA RQEFVIGGYV PSTANRGAVG
460 470 480 490 500
SLVLGVQENG RLVHVGRVGT GFTAATAADL FRRLQPLDVP DSPFAAALTA
510 520 530 540 550
RERKGVRYVR PDCVAEVEFR AWTADGHLRH AAFLGQREDK PAADIVREVE
560 570 580 590 600
APDPVSSGPS SKPVKPVSPE PAPARPARTL THPDRSYWPD AGVTKQDLAD
610 620 630 640 650
YYAAIWPRMA PFITDRALAL LRCPNGIAGP RFFQKNLWKG AGGHLVPLQD
660 670 680 690 700
PEGEAGTPLI GLHDRDGLID LVQAAALEIH PWGASVQAWS QPDMIVMDLD
710 720 730 740 750
PGDGVPWSMV IEAAREIRAR LERSGLASFV KTTGGKGLHV VAPLKPGADW
760 770 780 790 800
AVVKAFTRSM AQAMVSDSPQ RYVATITKSR RQGRILVDYL RNQRGATAVA
810 820 830 840 850
PYSPRARPGA PVAMPLAWNE LGPDIGPAHF TIGTIGARLA VADPWAEIRD

AARPLR
Length:856
Mass (Da):92,556
Last modified:February 5, 2008 - v1
Checksum:iC1CDD9863C029CAF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM889285 Genomic DNA. Translation: CAP54112.1.
RefSeqiWP_012222408.1. NC_010125.1.
YP_001600459.1. NC_010125.1.

Genome annotation databases

EnsemblBacteriaiCAP54112; CAP54112; GDI0169.
KEGGigdi:GDI_0169.
PATRICi22055994. VBIGluDia122154_0188.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM889285 Genomic DNA. Translation: CAP54112.1.
RefSeqiWP_012222408.1. NC_010125.1.
YP_001600459.1. NC_010125.1.

3D structure databases

ProteinModelPortaliA9H268.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272568.GDI_0169.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAP54112; CAP54112; GDI0169.
KEGGigdi:GDI_0169.
PATRICi22055994. VBIGluDia122154_0188.

Phylogenomic databases

KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciGDIA272568:GJPS-175-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of the sugarcane nitrogen-fixing endophyte Gluconacetobacter diazotrophicus Pal5."
    Bertalan M., Albano R., de Padua V., Rouws L., Rojas C., Hemerly A., Teixeira K., Schwab S., Araujo J., Oliveira A., Franca L., Magalhaes V., Alqueres S., Cardoso A., Almeida W., Loureiro M.M., Nogueira E., Cidade D.
    , Oliveira D., Simao T., Macedo J., Valadao A., Dreschsel M., Freitas F., Vidal M., Guedes H., Rodrigues E., Meneses C., Brioso P., Pozzer L., Figueiredo D., Montano H., Junior J., de Souza Filho G., Martin Quintana Flores V., Ferreira B., Branco A., Gonzalez P., Guillobel H., Lemos M., Seibel L., Macedo J., Alves-Ferreira M., Sachetto-Martins G., Coelho A., Santos E., Amaral G., Neves A., Pacheco A.B., Carvalho D., Lery L., Bisch P., Rossle S.C., Urmenyi T., Rael Pereira A., Silva R., Rondinelli E., von Kruger W., Martins O., Baldani J.I., Ferreira P.C.
    BMC Genomics 10:450-450(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 49037 / DSM 5601 / PAl5Imported.

Entry informationi

Entry nameiA9H268_GLUDA
AccessioniPrimary (citable) accession number: A9H268
Entry historyi
Integrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: June 24, 2015
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.