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A9H268

- A9H268_GLUDA

UniProt

A9H268 - A9H268_GLUDA

Protein
Submitted name:

Putative DNA ligase-like protein

Gene

GDI0169

Organism
Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 43 (01 Oct 2014)
      Sequence version 1 (05 Feb 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciGDIA272568:GJPS-175-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative DNA ligase-like proteinImported
    Gene namesi
    Ordered Locus Names:GDI0169Imported
    OrganismiGluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5)Imported
    Taxonomic identifieri272568 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodospirillalesAcetobacteraceaeGluconacetobacter
    ProteomesiUP000001176: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliA9H268.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.
    OMAiSACDMAL.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A9H268-1 [UniParc]FASTAAdd to Basket

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    MALDTYRNKR DFEATPEPEG AEAAEKPDTG AGHLFVIQKH AARRLHYDLR    50
    LEMDGVLKSW AVTRGPSLNP GDKRLAVQVE DHPLDYGTFE GTIPKGQYGG 100
    GTVMLWDKGT WTPLHDPVRG LAKGHLDFEL RGEKLHGRWN LVRMDGHREG 150
    THENWLLIKA ADSDARSKND ADILEERPES VKTGRAMDDI AAGAPGKDKV 200
    GKAAAQKAVT KKAAIPKDAP QADAAATGAA PCAGAKPGPL PSFVEPELAT 250
    LVRAAPTGPQ WLHEVKFDGY RLLARIEAGR VVLLTRTGLD WTARFGDQIS 300
    AALASLPVRA ALIDGELVVE TAGGTSDFSA LQADLSAGRT DRFIFYVFDL 350
    LHLDGYDLRD ATLEARKGAL HDLVPDDAAR LRFSGHFDEA GGQVLRHACR 400
    LGLEGIVSKQ RDAPYRSGRG RDWVKSKCVA RQEFVIGGYV PSTANRGAVG 450
    SLVLGVQENG RLVHVGRVGT GFTAATAADL FRRLQPLDVP DSPFAAALTA 500
    RERKGVRYVR PDCVAEVEFR AWTADGHLRH AAFLGQREDK PAADIVREVE 550
    APDPVSSGPS SKPVKPVSPE PAPARPARTL THPDRSYWPD AGVTKQDLAD 600
    YYAAIWPRMA PFITDRALAL LRCPNGIAGP RFFQKNLWKG AGGHLVPLQD 650
    PEGEAGTPLI GLHDRDGLID LVQAAALEIH PWGASVQAWS QPDMIVMDLD 700
    PGDGVPWSMV IEAAREIRAR LERSGLASFV KTTGGKGLHV VAPLKPGADW 750
    AVVKAFTRSM AQAMVSDSPQ RYVATITKSR RQGRILVDYL RNQRGATAVA 800
    PYSPRARPGA PVAMPLAWNE LGPDIGPAHF TIGTIGARLA VADPWAEIRD 850
    AARPLR 856
    Length:856
    Mass (Da):92,556
    Last modified:February 5, 2008 - v1
    Checksum:iC1CDD9863C029CAF
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM889285 Genomic DNA. Translation: CAP54112.1.
    RefSeqiYP_001600459.1. NC_010125.1.

    Genome annotation databases

    EnsemblBacteriaiCAP54112; CAP54112; GDI0169.
    GeneIDi5792297.
    KEGGigdi:GDI_0169.
    PATRICi22055994. VBIGluDia122154_0188.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM889285 Genomic DNA. Translation: CAP54112.1 .
    RefSeqi YP_001600459.1. NC_010125.1.

    3D structure databases

    ProteinModelPortali A9H268.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAP54112 ; CAP54112 ; GDI0169 .
    GeneIDi 5792297.
    KEGGi gdi:GDI_0169.
    PATRICi 22055994. VBIGluDia122154_0188.

    Phylogenomic databases

    KOi K01971.
    OMAi SACDMAL.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci GDIA272568:GJPS-175-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of the sugarcane nitrogen-fixing endophyte Gluconacetobacter diazotrophicus Pal5."
      Bertalan M., Albano R., de Padua V., Rouws L., Rojas C., Hemerly A., Teixeira K., Schwab S., Araujo J., Oliveira A., Franca L., Magalhaes V., Alqueres S., Cardoso A., Almeida W., Loureiro M.M., Nogueira E., Cidade D.
      , Oliveira D., Simao T., Macedo J., Valadao A., Dreschsel M., Freitas F., Vidal M., Guedes H., Rodrigues E., Meneses C., Brioso P., Pozzer L., Figueiredo D., Montano H., Junior J., de Souza Filho G., Martin Quintana Flores V., Ferreira B., Branco A., Gonzalez P., Guillobel H., Lemos M., Seibel L., Macedo J., Alves-Ferreira M., Sachetto-Martins G., Coelho A., Santos E., Amaral G., Neves A., Pacheco A.B., Carvalho D., Lery L., Bisch P., Rossle S.C., Urmenyi T., Rael Pereira A., Silva R., Rondinelli E., von Kruger W., Martins O., Baldani J.I., Ferreira P.C.
      BMC Genomics 10:450-450(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 49037 / DSM 5601 / PAl5Imported.

    Entry informationi

    Entry nameiA9H268_GLUDA
    AccessioniPrimary (citable) accession number: A9H268
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 5, 2008
    Last sequence update: February 5, 2008
    Last modified: October 1, 2014
    This is version 43 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3