A9GMQ1 (A9GMQ1_SORC5) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
L-arabinose isomerase HAMAP MF_00519
EC=5.3.1.4 HAMAP MF_00519

Gene names

Name:	araA HAMAP MF_00519 EMBL CAN93469.1
Ordered Locus Names:	sce3310

Organism

Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)) [Complete proteome] [HAMAP]

Taxonomic identifier

448385 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Deltaproteobacteria › Myxococcales › Sorangiineae › Polyangiaceae › Sorangium

Protein attributes

Sequence length	501 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Catalyzes the conversion of L-arabinose to L-ribulose By similarity. HAMAP MF_00519 SAAS SAAS003762
Catalytic activity	L-arabinose = L-ribulose. HAMAP MF_00519 SAAS SAAS003762
Cofactor	Binds 1 manganese ion per subunit By similarity. HAMAP MF_00519 SAAS SAAS003762
Pathway	Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 1/3. HAMAP MF_00519 SAAS SAAS003762
Sequence similarities	Belongs to the arabinose isomerase family. HAMAP MF_00519

Ontologies

Keywords
Biological process	Arabinose catabolism HAMAP MF_00519 SAAS SAAS003762 Carbohydrate metabolism
Ligand	Manganese HAMAP MF_00519 SAAS SAAS003762 Metal-binding HAMAP MF_00519 SAAS SAAS003762
Molecular function	Isomerase HAMAP MF_00519 SAAS SAAS003762 EMBL CAN93469.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	arabinose catabolic process Inferred from electronic annotation. Source: HAMAP fucose metabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular function	L-arabinose isomerase activity Inferred from electronic annotation. Source: HAMAP L-fucose isomerase activity Inferred from electronic annotation. Source: InterPro manganese ion binding Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Sites
	Metal binding	308	1	Manganese By similarity HAMAP MF_00519
	Metal binding	335	1	Manganese By similarity HAMAP MF_00519
	Metal binding	352	1	Manganese By similarity HAMAP MF_00519
	Metal binding	451	1	Manganese By similarity HAMAP MF_00519

Sequences

	Sequence		Length	Mass (Da)
	A9GMQ1 [UniParc]. Last modified February 5, 2008. Version 1. Checksum: 62F49F7056781A48	FASTA	501	55,106
	10 20 30 40 50 60 MQDLREGFEV WFLTGSQDLY GEEALKQVAE HAREIAASLD ASGKLPVRVV WKPTLKSSEA 70 80 90 100 110 120 ILAVCREANA SPRCAGVITW MHTFSPAKMW IAGLKRLEKP IAHLHTQYGR ELPWDSIDMD 130 140 150 160 170 180 FMNLNQSAHG DREFGYIGAR LRIDRRVIVG HWTDGDVLAK LDVWARAACA ILDGRRLKIA 190 200 210 220 230 240 RFGGMNMREV AVTGGDRVEA QVKFGWSVNG YGVGDLVGRI ADVDEREVDR LVAEYDEAYT 250 260 270 280 290 300 IAPALRRGGD RHGDLRYAAR QEAAMRSFLK EGGFGGFTTT FEDLHGLKQL PGLAVQRLME 310 320 330 340 350 360 DGYGFGAEGD WKSCGLVRAL KVMATGLRGG VSFMEDYTYH LVPGRERVLG AHMLEICPSI 370 380 390 400 410 420 AAGRPSLEIH PLSIGGKGDP CRLVFDAGVG PAVNVAMIDM GGRMRIVANE LESVAPDRAM 430 440 450 460 470 480 PKLPVARAVW VPKPDFRLAC EAWILAGGAH HCAHSRAVTM AHVEDFASIA GVELVRIGEG 490 500 TDIRSLKNEL RWNDLAYRLA H

References

[1]

"Complete genome sequence of the myxobacterium Sorangium cellulosum." Schneiker S., Perlova O., Kaiser O., Gerth K., Alici A., Altmeyer M.O., Bartels D., Bekel T., Beyer S., Bode E., Bode H.B., Bolten C.J., Choudhuri J.V., Doss S., Elnakady Y.A., Frank B., Gaigalat L., Goesmann A. , Groeger C., Gross F., Jelsbak L., Jelsbak L., Kalinowski J., Kegler C., Knauber T., Konietzny S., Kopp M., Krause L., Krug D., Linke B., Mahmud T., Martinez-Arias R., McHardy A.C., Merai M., Meyer F., Mormann S., Munoz-Dorado J., Perez J., Pradella S., Rachid S., Raddatz G., Rosenau F., Rueckert C., Sasse F., Scharfe M., Schuster S.C., Suen G., Treuner-Lange A., Velicer G.J., Vorholter F.-J., Weissman K.J., Welch R.D., Wenzel S.C., Whitworth D.E., Wilhelm S., Wittmann C., Bloecker H., Puehler A., Mueller R. Nat. Biotechnol. 25:1281-1289(2007) [PubMed: 17965706] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM746676 Genomic DNA. Translation: CAN93469.1.
RefSeq	YP_001613949.1. NC_010162.1.
3D structure databases
ProteinModelPortal	A9GMQ1.
SMR	A9GMQ1. Positions 1-499.
ModBase	Search...
Protein-protein interaction databases
STRING	A9GMQ1.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5813844.
GenomeReviews	Gene locus sce3310 in contig AM746676_GR.
KEGG	scl:sce3310.
PATRIC	23664781. VBISorCel80414_3602.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG297198.
OMA	EVCPTIA.
ProtClustDB	PRK02929.
Family and domain databases
HAMAP	MF_00519. Arabinose_Isome. [Tree]
InterPro	IPR024664. Ara_Isoase_C. IPR004216. Fuc/Ara_isomerase_C. IPR009015. Fucose_isomerase_N/cen. IPR003762. Lara_isomerase. [Graphical view]
KO	K01804.
Pfam	PF11762. Arabinose_Iso_C. 1 hit. PF02610. Arabinose_Isome. 1 hit. [Graphical view]
PIRSF	PIRSF001478. L-ara_isomerase. 1 hit.
ProDom	PD018364. Lara_isomerase. 1 hit. [Graphical view] [Entries sharing at least one domain]
SUPFAM	SSF50443. Fuc_isomerase_C. 1 hit. SSF53743. Fuc_isomerase_N. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A9GMQ1_SORC5

Accession

Primary (citable) accession number: A9GMQ1

Entry history

Integrated into UniProtKB/TrEMBL:	February 5, 2008
Last sequence update:	February 5, 2008
Last modified:	December 14, 2011
This is version 33 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)