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Protein
Submitted name:

Uncharacterized protein

Gene

Atu5224

Organism
Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens (strain C58))
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciAGRO:ATU5224-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Ordered Locus Names:Atu5224Imported
Encoded oniPlasmid AtImported
OrganismiAgrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens (strain C58))Imported
Taxonomic identifieri176299 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupAgrobacteriumAgrobacterium tumefaciens complex
Proteomesi
  • UP000000813 Componenti: Plasmid At

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VQYX-ray2.40A/B/C/D/E/F/G/H1-104[»]
ProteinModelPortaliA9CLJ4.
SMRiA9CLJ4. Positions 1-104.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiA9CLJ4.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini3 – 102100NIPSNAPInterPro annotationAdd
BLAST

Phylogenomic databases

HOGENOMiHOG000269058.
OMAiPTRLADW.

Family and domain databases

InterProiIPR011008. Dimeric_a/b-barrel.
IPR012577. NIPSNAP.
[Graphical view]
PfamiPF07978. NIPSNAP. 1 hit.
[Graphical view]
SUPFAMiSSF54909. SSF54909. 1 hit.

Sequencei

Sequence statusi: Complete.

A9CLJ4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIVEERIYRI RGGKMQEYLK LVREEGIAIQ APILGNLIGY FVTDIGPLSQ
60 70 80 90 100
VIHMWGYASL DDRAERRGKL AEDQRWQAFI PRLSVLIESS ENRILLPTDF

SPLR
Length:104
Mass (Da):12,029
Last modified:January 15, 2008 - v1
Checksum:i30AFE0BB81DB078D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE007872 Genomic DNA. Translation: AAK90595.1.
PIRiAC3187.
RefSeqiNP_396154.1. NC_003064.2.
WP_010974482.1. NC_003064.2.

Genome annotation databases

EnsemblBacteriaiAAK90595; AAK90595; Atu5224.
GeneIDi1136997.
KEGGiatu:Atu5224.
PATRICi20819609. VBIAgrTum91616_4899.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE007872 Genomic DNA. Translation: AAK90595.1.
PIRiAC3187.
RefSeqiNP_396154.1. NC_003064.2.
WP_010974482.1. NC_003064.2.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VQYX-ray2.40A/B/C/D/E/F/G/H1-104[»]
ProteinModelPortaliA9CLJ4.
SMRiA9CLJ4. Positions 1-104.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAK90595; AAK90595; Atu5224.
GeneIDi1136997.
KEGGiatu:Atu5224.
PATRICi20819609. VBIAgrTum91616_4899.

Phylogenomic databases

HOGENOMiHOG000269058.
OMAiPTRLADW.

Enzyme and pathway databases

BioCyciAGRO:ATU5224-MONOMER.

Miscellaneous databases

EvolutionaryTraceiA9CLJ4.

Family and domain databases

InterProiIPR011008. Dimeric_a/b-barrel.
IPR012577. NIPSNAP.
[Graphical view]
PfamiPF07978. NIPSNAP. 1 hit.
[Graphical view]
SUPFAMiSSF54909. SSF54909. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiA9CLJ4_AGRFC
AccessioniPrimary (citable) accession number: A9CLJ4
Entry historyi
Integrated into UniProtKB/TrEMBL: January 15, 2008
Last sequence update: January 15, 2008
Last modified: September 7, 2016
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, PlasmidImported, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.