Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

A9CK39

- SYGB_AGRT5

UniProt

A9CK39 - SYGB_AGRT5

Protein

Glycine--tRNA ligase beta subunit

Gene

glyS

Organism
Agrobacterium tumefaciens (strain C58 / ATCC 33970)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 41 (01 Oct 2014)
      Sequence version 1 (15 Jan 2008)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    Catalytic activityi

    ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly).UniRule annotation

    GO - Molecular functioni

    1. arginine-tRNA ligase activity Source: InterPro
    2. ATP binding Source: UniProtKB-KW
    3. glycine-tRNA ligase activity Source: UniProtKB-EC

    GO - Biological processi

    1. arginyl-tRNA aminoacylation Source: InterPro
    2. glycyl-tRNA aminoacylation Source: InterPro

    Keywords - Molecular functioni

    Aminoacyl-tRNA synthetase, Ligase

    Keywords - Biological processi

    Protein biosynthesis

    Keywords - Ligandi

    ATP-binding, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciAGRO:ATU0644-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Glycine--tRNA ligase beta subunitUniRule annotation (EC:6.1.1.14UniRule annotation)
    Alternative name(s):
    Glycyl-tRNA synthetase beta subunitUniRule annotation
    Short name:
    GlyRSUniRule annotation
    Gene namesi
    Name:glySUniRule annotation
    Ordered Locus Names:Atu0644
    ORF Names:AGR_C_1144
    OrganismiAgrobacterium tumefaciens (strain C58 / ATCC 33970)
    Taxonomic identifieri176299 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupAgrobacteriumAgrobacterium tumefaciens complex
    ProteomesiUP000000813: Chromosome circular

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 717717Glycine--tRNA ligase beta subunitPRO_1000101261Add
    BLAST

    Interactioni

    Subunit structurei

    Tetramer of two alpha and two beta subunits.UniRule annotation

    Protein-protein interaction databases

    STRINGi176299.Atu0644.

    Structurei

    3D structure databases

    ProteinModelPortaliA9CK39.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the class-II aminoacyl-tRNA synthetase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0751.
    HOGENOMiHOG000264304.
    KOiK01879.
    OMAiFFAIDEK.
    OrthoDBiEOG661H9S.

    Family and domain databases

    HAMAPiMF_00255. Gly_tRNA_synth_beta.
    InterProiIPR008909. DALR_anticod-bd.
    IPR015944. Gly-tRNA-synth_bsu.
    IPR006194. Gly-tRNA-synth_heterodimer.
    [Graphical view]
    PfamiPF05746. DALR_1. 1 hit.
    PF02092. tRNA_synt_2f. 1 hit.
    [Graphical view]
    PRINTSiPR01045. TRNASYNTHGB.
    PROSITEiPS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A9CK39-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPDLLLELRS EEIPARMQRK AAGDLKKLVT DALVERGLTY EGAREYWTPR    50
    RLTLDIRGLN ARSADVREEK KGPRTDANEK AIEGFLRGAG LNDISEAQVV 100
    SDPKKGDFYI AIINKPGRPA EEIIAEVMPG IIRSFPWPKS MRSGPASMPK 150
    GSSYAGIEGK GSESLRWVRP LQSIVCLFGP EHDETQVIPF VIDGIVAGNI 200
    TYGHRFHAPG PITVRRFEDY VSNLEKAKVI LDADRRKDII LHDAKDLAFA 250
    NGLELVEDEG LLEEVSGLVE WPQVLMGTFE EDYLQIPAEI IRLTIKTNQK 300
    CFVTRNQGAE EGLSNRFILI SNIEASDGGK EIIHGNGKVV RARLSDARHF 350
    WNRDQGDLPD LETLKDSAAK FDLDLKKPLD QRMAKLDALN VTFHAKLGTQ 400
    GERVARIREL AKALAPVVGA DGALVDRAVV LAKADLRTEA VGEFPELQGL 450
    MGRKYAVLQG ENESVAAAIE DHYKPQGPSD RLPADKVAIT VALADKLDTL 500
    VGFWAIDEKP TGSKDPFALR RAALGVVRIL LEKNVRLPLL SVARDSDLLS 550
    FFHDRLKVYL RDLGARYDLI DAVLTPESDD LLMIARRVEA LTAFITGEDG 600
    RNLLAGAKRA TQLLAAEEKK GTVVADGVSE ELLKLDAEKA LYAAIKTASA 650
    DAAKAVEGED FRSAMQALST LRAPVDKFFE DVLVNDEDAA IRANRLALLK 700
    AIREATGTVA DFSKITG 717
    Length:717
    Mass (Da):78,714
    Last modified:January 15, 2008 - v1
    Checksum:i94F26877B8EF0A48
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE007869 Genomic DNA. Translation: AAK86451.1.
    PIRiAF2655.
    B97437.
    RefSeqiNP_353666.1. NC_003062.2.

    Genome annotation databases

    EnsemblBacteriaiAAK86451; AAK86451; Atu0644.
    GeneIDi1132682.
    KEGGiatu:Atu0644.
    PATRICi20810985. VBIAgrTum91616_0636.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE007869 Genomic DNA. Translation: AAK86451.1 .
    PIRi AF2655.
    B97437.
    RefSeqi NP_353666.1. NC_003062.2.

    3D structure databases

    ProteinModelPortali A9CK39.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 176299.Atu0644.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAK86451 ; AAK86451 ; Atu0644 .
    GeneIDi 1132682.
    KEGGi atu:Atu0644.
    PATRICi 20810985. VBIAgrTum91616_0636.

    Phylogenomic databases

    eggNOGi COG0751.
    HOGENOMi HOG000264304.
    KOi K01879.
    OMAi FFAIDEK.
    OrthoDBi EOG661H9S.

    Enzyme and pathway databases

    BioCyci AGRO:ATU0644-MONOMER.

    Family and domain databases

    HAMAPi MF_00255. Gly_tRNA_synth_beta.
    InterProi IPR008909. DALR_anticod-bd.
    IPR015944. Gly-tRNA-synth_bsu.
    IPR006194. Gly-tRNA-synth_heterodimer.
    [Graphical view ]
    Pfami PF05746. DALR_1. 1 hit.
    PF02092. tRNA_synt_2f. 1 hit.
    [Graphical view ]
    PRINTSi PR01045. TRNASYNTHGB.
    PROSITEi PS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C58 / ATCC 33970.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C58 / ATCC 33970.

    Entry informationi

    Entry nameiSYGB_AGRT5
    AccessioniPrimary (citable) accession number: A9CK39
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: March 24, 2009
    Last sequence update: January 15, 2008
    Last modified: October 1, 2014
    This is version 41 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Aminoacyl-tRNA synthetases
      List of aminoacyl-tRNA synthetase entries
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3