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A9CK39

- SYGB_AGRT5

UniProt

A9CK39 - SYGB_AGRT5

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Protein

Glycine--tRNA ligase beta subunit

Gene

glyS

Organism
Agrobacterium tumefaciens (strain C58 / ATCC 33970)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly).UniRule annotation

GO - Molecular functioni

  1. arginine-tRNA ligase activity Source: InterPro
  2. ATP binding Source: UniProtKB-KW
  3. glycine-tRNA ligase activity Source: UniProtKB-EC

GO - Biological processi

  1. arginyl-tRNA aminoacylation Source: InterPro
  2. glycyl-tRNA aminoacylation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Aminoacyl-tRNA synthetase, Ligase

Keywords - Biological processi

Protein biosynthesis

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciAGRO:ATU0644-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Glycine--tRNA ligase beta subunitUniRule annotation (EC:6.1.1.14UniRule annotation)
Alternative name(s):
Glycyl-tRNA synthetase beta subunitUniRule annotation
Short name:
GlyRSUniRule annotation
Gene namesi
Name:glySUniRule annotation
Ordered Locus Names:Atu0644
ORF Names:AGR_C_1144
OrganismiAgrobacterium tumefaciens (strain C58 / ATCC 33970)
Taxonomic identifieri176299 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupAgrobacteriumAgrobacterium tumefaciens complex
ProteomesiUP000000813: Chromosome circular

Subcellular locationi

Cytoplasm UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 717717Glycine--tRNA ligase beta subunitPRO_1000101261Add
BLAST

Interactioni

Subunit structurei

Tetramer of two alpha and two beta subunits.UniRule annotation

Protein-protein interaction databases

STRINGi176299.Atu0644.

Structurei

3D structure databases

ProteinModelPortaliA9CK39.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the class-II aminoacyl-tRNA synthetase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0751.
HOGENOMiHOG000264304.
KOiK01879.
OMAiFFAIDEK.
OrthoDBiEOG661H9S.

Family and domain databases

HAMAPiMF_00255. Gly_tRNA_synth_beta.
InterProiIPR008909. DALR_anticod-bd.
IPR015944. Gly-tRNA-synth_bsu.
IPR006194. Gly-tRNA-synth_heterodimer.
[Graphical view]
PfamiPF05746. DALR_1. 1 hit.
PF02092. tRNA_synt_2f. 1 hit.
[Graphical view]
PRINTSiPR01045. TRNASYNTHGB.
PROSITEiPS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A9CK39-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPDLLLELRS EEIPARMQRK AAGDLKKLVT DALVERGLTY EGAREYWTPR
60 70 80 90 100
RLTLDIRGLN ARSADVREEK KGPRTDANEK AIEGFLRGAG LNDISEAQVV
110 120 130 140 150
SDPKKGDFYI AIINKPGRPA EEIIAEVMPG IIRSFPWPKS MRSGPASMPK
160 170 180 190 200
GSSYAGIEGK GSESLRWVRP LQSIVCLFGP EHDETQVIPF VIDGIVAGNI
210 220 230 240 250
TYGHRFHAPG PITVRRFEDY VSNLEKAKVI LDADRRKDII LHDAKDLAFA
260 270 280 290 300
NGLELVEDEG LLEEVSGLVE WPQVLMGTFE EDYLQIPAEI IRLTIKTNQK
310 320 330 340 350
CFVTRNQGAE EGLSNRFILI SNIEASDGGK EIIHGNGKVV RARLSDARHF
360 370 380 390 400
WNRDQGDLPD LETLKDSAAK FDLDLKKPLD QRMAKLDALN VTFHAKLGTQ
410 420 430 440 450
GERVARIREL AKALAPVVGA DGALVDRAVV LAKADLRTEA VGEFPELQGL
460 470 480 490 500
MGRKYAVLQG ENESVAAAIE DHYKPQGPSD RLPADKVAIT VALADKLDTL
510 520 530 540 550
VGFWAIDEKP TGSKDPFALR RAALGVVRIL LEKNVRLPLL SVARDSDLLS
560 570 580 590 600
FFHDRLKVYL RDLGARYDLI DAVLTPESDD LLMIARRVEA LTAFITGEDG
610 620 630 640 650
RNLLAGAKRA TQLLAAEEKK GTVVADGVSE ELLKLDAEKA LYAAIKTASA
660 670 680 690 700
DAAKAVEGED FRSAMQALST LRAPVDKFFE DVLVNDEDAA IRANRLALLK
710
AIREATGTVA DFSKITG
Length:717
Mass (Da):78,714
Last modified:January 15, 2008 - v1
Checksum:i94F26877B8EF0A48
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE007869 Genomic DNA. Translation: AAK86451.1.
PIRiAF2655.
B97437.
RefSeqiNP_353666.1. NC_003062.2.

Genome annotation databases

EnsemblBacteriaiAAK86451; AAK86451; Atu0644.
GeneIDi1132682.
KEGGiatu:Atu0644.
PATRICi20810985. VBIAgrTum91616_0636.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE007869 Genomic DNA. Translation: AAK86451.1 .
PIRi AF2655.
B97437.
RefSeqi NP_353666.1. NC_003062.2.

3D structure databases

ProteinModelPortali A9CK39.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 176299.Atu0644.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAK86451 ; AAK86451 ; Atu0644 .
GeneIDi 1132682.
KEGGi atu:Atu0644.
PATRICi 20810985. VBIAgrTum91616_0636.

Phylogenomic databases

eggNOGi COG0751.
HOGENOMi HOG000264304.
KOi K01879.
OMAi FFAIDEK.
OrthoDBi EOG661H9S.

Enzyme and pathway databases

BioCyci AGRO:ATU0644-MONOMER.

Family and domain databases

HAMAPi MF_00255. Gly_tRNA_synth_beta.
InterProi IPR008909. DALR_anticod-bd.
IPR015944. Gly-tRNA-synth_bsu.
IPR006194. Gly-tRNA-synth_heterodimer.
[Graphical view ]
Pfami PF05746. DALR_1. 1 hit.
PF02092. tRNA_synt_2f. 1 hit.
[Graphical view ]
PRINTSi PR01045. TRNASYNTHGB.
PROSITEi PS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C58 / ATCC 33970.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C58 / ATCC 33970.

Entry informationi

Entry nameiSYGB_AGRT5
AccessioniPrimary (citable) accession number: A9CK39
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 24, 2009
Last sequence update: January 15, 2008
Last modified: October 29, 2014
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Aminoacyl-tRNA synthetases
    List of aminoacyl-tRNA synthetase entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3