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A9CK39 (SYGB_AGRT5) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 39. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Glycine--tRNA ligase beta subunit

EC=6.1.1.14
Alternative name(s):
Glycyl-tRNA synthetase beta subunit
Short name=GlyRS
Gene names
Name:glyS
Ordered Locus Names:Atu0644
ORF Names:AGR_C_1144
OrganismAgrobacterium tumefaciens (strain C58 / ATCC 33970) [Reference proteome] [HAMAP]
Taxonomic identifier176299 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupAgrobacteriumAgrobacterium tumefaciens complex

Protein attributes

Sequence length717 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly). HAMAP-Rule MF_00255

Subunit structure

Tetramer of two alpha and two beta subunits By similarity.

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00255.

Sequence similarities

Belongs to the class-II aminoacyl-tRNA synthetase family.

Ontologies

Keywords
   Biological processProtein biosynthesis
   Cellular componentCytoplasm
   LigandATP-binding
Nucleotide-binding
   Molecular functionAminoacyl-tRNA synthetase
Ligase
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processarginyl-tRNA aminoacylation

Inferred from electronic annotation. Source: InterPro

glycyl-tRNA aminoacylation

Inferred from electronic annotation. Source: InterPro

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionATP binding

Inferred from electronic annotation. Source: UniProtKB-KW

arginine-tRNA ligase activity

Inferred from electronic annotation. Source: InterPro

glycine-tRNA ligase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 717717Glycine--tRNA ligase beta subunit HAMAP-Rule MF_00255
PRO_1000101261

Sequences

Sequence LengthMass (Da)Tools
A9CK39 [UniParc].

Last modified January 15, 2008. Version 1.
Checksum: 94F26877B8EF0A48

FASTA71778,714
        10         20         30         40         50         60 
MPDLLLELRS EEIPARMQRK AAGDLKKLVT DALVERGLTY EGAREYWTPR RLTLDIRGLN 

        70         80         90        100        110        120 
ARSADVREEK KGPRTDANEK AIEGFLRGAG LNDISEAQVV SDPKKGDFYI AIINKPGRPA 

       130        140        150        160        170        180 
EEIIAEVMPG IIRSFPWPKS MRSGPASMPK GSSYAGIEGK GSESLRWVRP LQSIVCLFGP 

       190        200        210        220        230        240 
EHDETQVIPF VIDGIVAGNI TYGHRFHAPG PITVRRFEDY VSNLEKAKVI LDADRRKDII 

       250        260        270        280        290        300 
LHDAKDLAFA NGLELVEDEG LLEEVSGLVE WPQVLMGTFE EDYLQIPAEI IRLTIKTNQK 

       310        320        330        340        350        360 
CFVTRNQGAE EGLSNRFILI SNIEASDGGK EIIHGNGKVV RARLSDARHF WNRDQGDLPD 

       370        380        390        400        410        420 
LETLKDSAAK FDLDLKKPLD QRMAKLDALN VTFHAKLGTQ GERVARIREL AKALAPVVGA 

       430        440        450        460        470        480 
DGALVDRAVV LAKADLRTEA VGEFPELQGL MGRKYAVLQG ENESVAAAIE DHYKPQGPSD 

       490        500        510        520        530        540 
RLPADKVAIT VALADKLDTL VGFWAIDEKP TGSKDPFALR RAALGVVRIL LEKNVRLPLL 

       550        560        570        580        590        600 
SVARDSDLLS FFHDRLKVYL RDLGARYDLI DAVLTPESDD LLMIARRVEA LTAFITGEDG 

       610        620        630        640        650        660 
RNLLAGAKRA TQLLAAEEKK GTVVADGVSE ELLKLDAEKA LYAAIKTASA DAAKAVEGED 

       670        680        690        700        710 
FRSAMQALST LRAPVDKFFE DVLVNDEDAA IRANRLALLK AIREATGTVA DFSKITG 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE007869 Genomic DNA. Translation: AAK86451.1.
PIRAF2655.
B97437.
RefSeqNP_353666.1. NC_003062.2.

3D structure databases

ProteinModelPortalA9CK39.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING176299.Atu0644.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAK86451; AAK86451; Atu0644.
GeneID1132682.
KEGGatu:Atu0644.
PATRIC20810985. VBIAgrTum91616_0636.

Phylogenomic databases

eggNOGCOG0751.
HOGENOMHOG000264304.
KOK01879.
OMAMVMAEDE.
OrthoDBEOG661H9S.
ProtClustDBPRK01233.

Enzyme and pathway databases

BioCycAGRO:ATU0644-MONOMER.

Family and domain databases

HAMAPMF_00255. Gly_tRNA_synth_beta.
InterProIPR008909. DALR_anticod-bd.
IPR015944. Gly-tRNA-synth_bsu.
IPR006194. Gly-tRNA-synth_heterodimer.
[Graphical view]
PfamPF05746. DALR_1. 1 hit.
PF02092. tRNA_synt_2f. 1 hit.
[Graphical view]
PRINTSPR01045. TRNASYNTHGB.
PROSITEPS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameSYGB_AGRT5
AccessionPrimary (citable) accession number: A9CK39
Entry history
Integrated into UniProtKB/Swiss-Prot: March 24, 2009
Last sequence update: January 15, 2008
Last modified: February 19, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Aminoacyl-tRNA synthetases

List of aminoacyl-tRNA synthetase entries