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Protein
Submitted name:

Oligo alginate lyase

Gene

Atu3025

Organism
Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens (strain C58))
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

LyaseImported

Enzyme and pathway databases

BioCyciAGRO:ATU3025-MONOMER.
BRENDAi4.2.2.11. 200.
4.2.2.3. 200.

Protein family/group databases

CAZyiPL15. Polysaccharide Lyase Family 15.

Names & Taxonomyi

Protein namesi
Submitted name:
Oligo alginate lyaseImported
Gene namesi
Ordered Locus Names:Atu3025Imported
OrganismiAgrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens (strain C58))Imported
Taxonomic identifieri176299 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupAgrobacteriumAgrobacterium tumefaciens complex
Proteomesi
  • UP000000813 Componenti: Chromosome linear

Interactioni

Protein-protein interaction databases

STRINGi176299.Atu3025.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3A0OX-ray2.11A/B1-776[»]
3AFLX-ray2.99A1-776[»]
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiA9CEJ9.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini51 – 453403DUF4962InterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiENOG4108SY3. Bacteria.
ENOG4111G4N. LUCA.
HOGENOMiHOG000024834.
OMAiYDSHAVR.

Family and domain databases

InterProiIPR008929. Chondroitin_lyas.
IPR012480. Hepar_II_III.
IPR032518. HepII_N.
IPR012364. Oligosacch_lyase.
[Graphical view]
PfamiPF16332. DUF4962. 1 hit.
PF07940. Hepar_II_III. 1 hit.
[Graphical view]
PIRSFiPIRSF034409. Oligosach_lyase. 1 hit.
SUPFAMiSSF48230. SSF48230. 1 hit.

Sequencei

Sequence statusi: Complete.

A9CEJ9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRPSAPAISR QTLLDEPRPG SLTIGYEPSE EAQPTENPPR FSWLPDIDDG
60 70 80 90 100
ARYVLRISTD PGFTDKKTLV FEDLAWNFFT PDEALPDGHY HWCYALWDQK
110 120 130 140 150
SATAHSNWST VRSFEISEAL PKTPLPGRSA RHAAAQTSHP RLWLNSEQLS
160 170 180 190 200
AFADAVAKDP NHCGWAEFYE KSVEPWLERP VMPEPQPYPN NTRVATLWRQ
210 220 230 240 250
MYIDCQEVIY AIRHLAIAGR VLGRDDLLDA SRKWLLAVAA WDTKGATSRA
260 270 280 290 300
YNDEAGFRVV VALAWGYDWL YDHLSEDERR TVRSVLLERT REVADHVIAH
310 320 330 340 350
ARIHVFPYDS HAVRSLSAVL TPACIALQGE SDEAGEWLDY TVEFLATLYS
360 370 380 390 400
PWAGTDGGWA EGPHYWMTGM AYLIEAANLI RSYIGYDLYQ RPFFQNTGRF
410 420 430 440 450
PLYTKAPGTR RANFGDDSTL GDLPGLKLGY NVRQFAGVTG NGHYQWYFDH
460 470 480 490 500
IKADATGTEM AFYNYGWWDL NFDDLVYRHD YPQVEAVSPA DLPALAVFDD
510 520 530 540 550
IGWATIQKDM EDPDRHLQFV FKSSPYGSLS HSHGDQNAFV LYAHGEDLAI
560 570 580 590 600
QSGYYVAFNS QMHLNWRRQT RSKNAVLIGG KGQYAEKDKA LARRAAGRIV
610 620 630 640 650
SVEEQPGHVR IVGDATAAYQ VANPLVQKVL RETHFVNDSY FVIVDEVECS
660 670 680 690 700
EPQELQWLCH TLGAPQTGRS SFRYNGRKAG FYGQFVYSSG GTPQISAVEG
710 720 730 740 750
FPDIDPKEFE GLDIHHHVCA TVPAATRHRL VTLLVPYSLK EPKRIFSFID
760 770
DQGFSTDIYF SDVDDERFKL SLPKQF
Length:776
Mass (Da):87,871
Last modified:January 15, 2008 - v1
Checksum:iF5889105922563E3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE007870 Genomic DNA. Translation: AAK90358.1.
PIRiAC2928.
D98354.
RefSeqiNP_357573.1. NC_003063.2.
WP_010972694.1. NC_003063.2.

Genome annotation databases

EnsemblBacteriaiAAK90358; AAK90358; Atu3025.
GeneIDi1135040.
KEGGiatu:Atu3025.
PATRICi20815506. VBIAgrTum91616_2865.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE007870 Genomic DNA. Translation: AAK90358.1.
PIRiAC2928.
D98354.
RefSeqiNP_357573.1. NC_003063.2.
WP_010972694.1. NC_003063.2.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3A0OX-ray2.11A/B1-776[»]
3AFLX-ray2.99A1-776[»]
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi176299.Atu3025.

Protein family/group databases

CAZyiPL15. Polysaccharide Lyase Family 15.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAK90358; AAK90358; Atu3025.
GeneIDi1135040.
KEGGiatu:Atu3025.
PATRICi20815506. VBIAgrTum91616_2865.

Phylogenomic databases

eggNOGiENOG4108SY3. Bacteria.
ENOG4111G4N. LUCA.
HOGENOMiHOG000024834.
OMAiYDSHAVR.

Enzyme and pathway databases

BioCyciAGRO:ATU3025-MONOMER.
BRENDAi4.2.2.11. 200.
4.2.2.3. 200.

Miscellaneous databases

EvolutionaryTraceiA9CEJ9.

Family and domain databases

InterProiIPR008929. Chondroitin_lyas.
IPR012480. Hepar_II_III.
IPR032518. HepII_N.
IPR012364. Oligosacch_lyase.
[Graphical view]
PfamiPF16332. DUF4962. 1 hit.
PF07940. Hepar_II_III. 1 hit.
[Graphical view]
PIRSFiPIRSF034409. Oligosach_lyase. 1 hit.
SUPFAMiSSF48230. SSF48230. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiA9CEJ9_AGRFC
AccessioniPrimary (citable) accession number: A9CEJ9
Entry historyi
Integrated into UniProtKB/TrEMBL: January 15, 2008
Last sequence update: January 15, 2008
Last modified: September 7, 2016
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.