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A9C3H8 (PSD_DELAS) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Phosphatidylserine decarboxylase proenzyme
EC=4.1.1.65

Cleaved into the following 2 chains:

  1. Phosphatidylserine decarboxylase alpha chain
  2. Phosphatidylserine decarboxylase beta chain
Gene names
Name:psd
Ordered Locus Names:Daci_4660
OrganismDelftia acidovorans (strain DSM 14801 / SPH-1) [Complete proteome] [HAMAP]
Taxonomic identifier398578 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Comamonadaceae › Delftia

Protein attributes

Sequence length284 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Phosphatidyl-L-serine = phosphatidylethanolamine + CO2. HAMAP MF_00662

Cofactor

Pyruvoyl group By similarity. HAMAP MF_00662

Pathway

Phospholipid metabolism; phosphatidylethanolamine biosynthesis; phosphatidylethanolamine from CDP-diacylglycerol: step 2/2. HAMAP MF_00662

Sequence similarities

Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily.

Ontologies

Keywords
   Biological processPhospholipid biosynthesis
   LigandPyruvate
   Molecular functionDecarboxylase
Lyase
   PTMZymogen
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processphospholipid biosynthetic process

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular functionphosphatidylserine decarboxylase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 247247Phosphatidylserine decarboxylase beta chain By similarity
PRO_1000131356
Chain248 – 28437Phosphatidylserine decarboxylase alpha chain By similarity
PRO_1000131357

Sites

Site247 – 2482Cleavage (non-hydrolytic) By similarity

Amino acid modifications

Modified residue2481Pyruvic acid (Ser) By similarity

Sequences

Sequence LengthMass (Da)Tools
A9C3H8 [UniParc].

Last modified January 15, 2008. Version 1.
Checksum: 16229F1D6F5EA6AC

FASTA28430,888
        10         20         30         40         50         60 
MSDRLAVLSQ YLLPKQALTA VMGRLAQARA GDLTTAVIRR FIARYGVDMS EAADSDPAAY 

        70         80         90        100        110        120 
ASFNEFFTRA LKPGVRPLAS ADWVCPVDGA ISQIGAIEGE QIFQAKGHSY SATALVGGDA 

       130        140        150        160        170        180 
QLARQFDNGH FATIYLSPRD YHRIHMPCAG RLRRMIYVPG ELFSVNPVTA RGVPGLFARN 

       190        200        210        220        230        240 
ERVVCVFDTD HGPMVLVLVG ATIVGSMGTV WHGIVNPPRP GRIQDWRYDD QSIVLGQGEE 

       250        260        270        280 
MGRFQLGSTV VMLFPASAGL RFNGQWTHAA PVRLGQKMAG RNEA

« Hide

References

[1]"Complete sequence of Delftia acidovorans DSM 14801 / SPH-1."
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Lowry S., Clum A., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Schleheck D., Richardson P.
Submitted (NOV-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 14801 / SPH-1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000884 Genomic DNA. Translation: ABX37289.1.
RefSeqYP_001565674.1. NC_010002.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGA9C3H8.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5750250.
GenomeReviewsGene locus Daci_4660 in contig CP000884_GR.
KEGGdac:Daci_4660.
PATRIC21643279. VBIDelAci41351_4690.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG302256.
OMAMCQSEAR.
ProtClustDBPRK00044.

Family and domain databases

HAMAPMF_00662. PS_decarb_type1.
[Tree]
InterProIPR003817. PS_Dcarbxylase.
IPR005221. PS_decarb.
[Graphical view]
KOK01613.
PANTHERPTHR10067. PS_decarb. 1 hit.
PfamPF02666. PS_Dcarbxylase. 1 hit.
[Graphical view]
TIGRFAMsTIGR00163. PS_decarb. 1 hit.
ProtoNetSearch...

Entry information

Entry namePSD_DELAS
AccessionPrimary (citable) accession number: A9C3H8
Entry history
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: January 15, 2008
Last modified: January 25, 2012
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

PATHWAY comments

Index of metabolic and biosynthesis pathways

SIMILARITY comments

Index of protein domains and families

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