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Protein

Biotin synthase

Gene

bioB

Organism
Delftia acidovorans (strain DSM 14801 / SPH-1)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism.UniRule annotation

Catalytic activityi

Dethiobiotin + sulfur-(sulfur carrier) + 2 S-adenosyl-L-methionine + 2 reduced [2Fe-2S] ferredoxin = biotin + (sulfur carrier) + 2 L-methionine + 2 5'-deoxyadenosine + 2 oxidized [2Fe-2S] ferredoxin.UniRule annotation

Cofactori

Protein has several cofactor binding sites:
  • [4Fe-4S] clusterUniRule annotationNote: Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.UniRule annotation
  • [2Fe-2S] clusterUniRule annotationNote: Binds 1 [2Fe-2S] cluster. The cluster is coordinated with 3 cysteines and 1 arginine.UniRule annotation

Pathwayi: biotin biosynthesis

This protein is involved in step 2 of the subpathway that synthesizes biotin from 7,8-diaminononanoate.UniRule annotation
Proteins known to be involved in the 2 steps of the subpathway in this organism are:
  1. ATP-dependent dethiobiotin synthetase BioD (bioD)
  2. Biotin synthase (bioB)
This subpathway is part of the pathway biotin biosynthesis, which is itself part of Cofactor biosynthesis.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes biotin from 7,8-diaminononanoate, the pathway biotin biosynthesis and in Cofactor biosynthesis.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi87Iron-sulfur 1 (4Fe-4S-S-AdoMet)UniRule annotation1
Metal bindingi91Iron-sulfur 1 (4Fe-4S-S-AdoMet)UniRule annotation1
Metal bindingi94Iron-sulfur 1 (4Fe-4S-S-AdoMet)UniRule annotation1
Metal bindingi131Iron-sulfur 2 (2Fe-2S)UniRule annotation1
Metal bindingi162Iron-sulfur 2 (2Fe-2S)UniRule annotation1
Metal bindingi222Iron-sulfur 2 (2Fe-2S)UniRule annotation1
Metal bindingi294Iron-sulfur 2 (2Fe-2S)UniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionTransferase
Biological processBiotin biosynthesis
Ligand2Fe-2S, 4Fe-4S, Iron, Iron-sulfur, Metal-binding, S-adenosyl-L-methionine

Enzyme and pathway databases

UniPathwayiUPA00078; UER00162

Names & Taxonomyi

Protein namesi
Recommended name:
Biotin synthaseUniRule annotation (EC:2.8.1.6UniRule annotation)
Gene namesi
Name:bioBUniRule annotation
Ordered Locus Names:Daci_3779
OrganismiDelftia acidovorans (strain DSM 14801 / SPH-1)
Taxonomic identifieri398578 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeDelftia
Proteomesi
  • UP000000784 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003813431 – 353Biotin synthaseAdd BLAST353

Proteomic databases

PRIDEiA9C2R2

Interactioni

Subunit structurei

Homodimer.UniRule annotation

Protein-protein interaction databases

STRINGi398578.Daci_3779

Structurei

3D structure databases

ProteinModelPortaliA9C2R2
SMRiA9C2R2
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the radical SAM superfamily. Biotin synthase family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105CZF Bacteria
COG0502 LUCA
HOGENOMiHOG000239957
KOiK01012
OMAiADRFCMG

Family and domain databases

Gene3Di3.20.20.70, 1 hit
HAMAPiMF_01694 BioB, 1 hit
InterProiView protein in InterPro
IPR013785 Aldolase_TIM
IPR010722 BATS_dom
IPR034416 BATS_domain_containing
IPR002684 Biotin_synth/BioAB
IPR024177 Biotin_synthase
IPR006638 Elp3/MiaB/NifB
IPR007197 rSAM
PANTHERiPTHR22976 PTHR22976, 1 hit
PfamiView protein in Pfam
PF06968 BATS, 1 hit
PF04055 Radical_SAM, 1 hit
PIRSFiPIRSF001619 Biotin_synth, 1 hit
SFLDiSFLDF00272 biotin_synthase, 1 hit
SFLDG01060 BATS_domain_containing, 1 hit
SFLDG01278 biotin_synthase_like, 1 hit
SFLDS00029 Radical_SAM, 1 hit
SMARTiView protein in SMART
SM00876 BATS, 1 hit
SM00729 Elp3, 1 hit
TIGRFAMsiTIGR00433 bioB, 1 hit

Sequencei

Sequence statusi: Complete.

A9C2R2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTACSTTPTT SATSAQPAAG SPLQWHARPS KSDTLPFEGA WSVQAIQELL
60 70 80 90 100
DKPFMDLMFQ AQSVHREHWP AGDIELATLL SVKTGGCPEN CGYCPQAAEF
110 120 130 140 150
DTGVKAEKLM SVDEVTRAAQ AAKDAGATRF CMGAAWRAPK DRDIEKMNEL
160 170 180 190 200
IGAVKGLGMQ TCATLGMLQP HQAQSLREAG LDYYNHNLDT APEYYQDVVS
210 220 230 240 250
TRQYQDRLDT LKAVRGAGIS VCCGGIIGMG EAPVHRAGLI AQLANLNPHP
260 270 280 290 300
ESVPINSLVR VPGTPLADSE PVDPLDFVRV IAVARITMPT ARVRLSAGRQ
310 320 330 340 350
QLGDAVQALC FMAGANSIFY GDKLLVTGNP DVEADTTLLR KLGLSGTRTS

VQE
Length:353
Mass (Da):37,780
Last modified:January 15, 2008 - v1
Checksum:i62DBF333CF284EF5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000884 Genomic DNA Translation: ABX36411.1
RefSeqiWP_012205605.1, NC_010002.1

Genome annotation databases

EnsemblBacteriaiABX36411; ABX36411; Daci_3779
GeneIDi24115438
KEGGidac:Daci_3779

Similar proteinsi

Entry informationi

Entry nameiBIOB_DELAS
AccessioniPrimary (citable) accession number: A9C2R2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 28, 2009
Last sequence update: January 15, 2008
Last modified: May 23, 2018
This is version 66 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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