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A9BQY2

- RHMD_DELAS

UniProt

A9BQY2 - RHMD_DELAS

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Protein

L-rhamnonate dehydratase

Gene
rhmD, Daci_0291
Organism
Delftia acidovorans (strain DSM 14801 / SPH-1)
Status
Reviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

Catalyzes the dehydration of L-rhamnonate to 2-keto-3-deoxy-L-rhamnonate (KDR) By similarity.UniRule annotation

Catalytic activityi

L-rhamnonate = 2-dehydro-3-deoxy-L-rhamnonate + H2O.UniRule annotation

Cofactori

Binds 1 magnesium ion per subunit By similarity.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei23 – 231Substrate By similarity
Binding sitei49 – 491Substrate By similarity
Metal bindingi215 – 2151Magnesium By similarity
Metal bindingi241 – 2411Magnesium By similarity
Metal bindingi269 – 2691Magnesium By similarity
Sitei292 – 2921Increases basicity of active site His By similarity
Active sitei319 – 3191Proton acceptor By similarity
Binding sitei339 – 3391Substrate By similarity
Sitei339 – 3391Transition state stabilizer By similarity

GO - Molecular functioni

  1. L-rhamnonate dehydratase activity Source: UniProtKB-HAMAP
  2. magnesium ion binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. cellular amino acid catabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Lyase

Keywords - Ligandi

Magnesium, Metal-binding

Enzyme and pathway databases

BioCyciDACI398578:GHK3-291-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
L-rhamnonate dehydratase (EC:4.2.1.90)
Short name:
RhamD
Gene namesi
Name:rhmD
Ordered Locus Names:Daci_0291
OrganismiDelftia acidovorans (strain DSM 14801 / SPH-1)
Taxonomic identifieri398578 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeDelftia
ProteomesiUP000000784: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 395395L-rhamnonate dehydrataseUniRule annotationPRO_0000351690Add
BLAST

Interactioni

Subunit structurei

Homooctamer; tetramer of dimers By similarity.UniRule annotation

Protein-protein interaction databases

STRINGi398578.Daci_0291.

Structurei

3D structure databases

ProteinModelPortaliA9BQY2.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG4948.
HOGENOMiHOG000113755.
KOiK12661.
OrthoDBiEOG68Q0M0.

Family and domain databases

Gene3Di3.20.20.120. 1 hit.
3.30.390.10. 1 hit.
HAMAPiMF_01288. Rhamnon_dehydrat.
InterProiIPR029065. Enolase_C-like.
IPR029017. Enolase_N_like.
IPR023444. L-Rhamnon_dehydrat.
IPR018110. Mandel_Rmase/mucon_lact_enz_CS.
IPR013342. Mandelate_racemase_C.
IPR013341. Mandelate_racemase_N.
IPR001354. MR_MLE.
[Graphical view]
PANTHERiPTHR13794. PTHR13794. 1 hit.
PfamiPF01188. MR_MLE. 1 hit.
PF02746. MR_MLE_N. 1 hit.
[Graphical view]
SMARTiSM00922. MR_MLE. 1 hit.
[Graphical view]
SUPFAMiSSF51604. SSF51604. 1 hit.
SSF54826. SSF54826. 1 hit.
PROSITEiPS00908. MR_MLE_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A9BQY2-1 [UniParc]FASTAAdd to Basket

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MTQIPTIKQV RAFTLKGGGA DYHDQSDGHW IDDHIATPMA KYPEYRQSRR    50
SFGINVLGTL VVEIEDSAGR VGFAVTTGGE PAAYIVEKHL ARFLEGARVT 100
DIERIWDQMY LSTLYYGRKG IVINTISGVD LALWDLLGKV RGEPVHQLLG 150
GAVRDELQFY ATGARPDLAQ KMGFIGGKMP LHHGPAEGEE GLRRNLQELA 200
TMRERVGPDF WLMLDCWMSL DVNYATRLAQ GAQAHGLKWI EEALPPDDYW 250
GYAALRKNVP TGMLVTTGEH EATRWGFRQL LEMGCCDIIQ PDVGWCGGIT 300
ELLKISALAD AHQALVIPHG SSVYSYHFVA TRHNSPFAEF LMMAPKADEV 350
VPMFHPQLLG EPVPVNGRMR LSALDRPGFG VELNPECALH RPYTH 395
Length:395
Mass (Da):43,944
Last modified:October 14, 2008 - v2
Checksum:i96CD5CB9833E4E1F
GO

Sequence cautioni

The sequence ABX32937.1 differs from that shown. Reason: Erroneous initiation.

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000884 Genomic DNA. Translation: ABX32937.1. Different initiation.
RefSeqiYP_001561322.1. NC_010002.1.

Genome annotation databases

EnsemblBacteriaiABX32937; ABX32937; Daci_0291.
GeneIDi5745827.
KEGGidac:Daci_0291.
PATRICi21634395. VBIDelAci41351_0303.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000884 Genomic DNA. Translation: ABX32937.1 . Different initiation.
RefSeqi YP_001561322.1. NC_010002.1.

3D structure databases

ProteinModelPortali A9BQY2.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 398578.Daci_0291.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABX32937 ; ABX32937 ; Daci_0291 .
GeneIDi 5745827.
KEGGi dac:Daci_0291.
PATRICi 21634395. VBIDelAci41351_0303.

Phylogenomic databases

eggNOGi COG4948.
HOGENOMi HOG000113755.
KOi K12661.
OrthoDBi EOG68Q0M0.

Enzyme and pathway databases

BioCyci DACI398578:GHK3-291-MONOMER.

Family and domain databases

Gene3Di 3.20.20.120. 1 hit.
3.30.390.10. 1 hit.
HAMAPi MF_01288. Rhamnon_dehydrat.
InterProi IPR029065. Enolase_C-like.
IPR029017. Enolase_N_like.
IPR023444. L-Rhamnon_dehydrat.
IPR018110. Mandel_Rmase/mucon_lact_enz_CS.
IPR013342. Mandelate_racemase_C.
IPR013341. Mandelate_racemase_N.
IPR001354. MR_MLE.
[Graphical view ]
PANTHERi PTHR13794. PTHR13794. 1 hit.
Pfami PF01188. MR_MLE. 1 hit.
PF02746. MR_MLE_N. 1 hit.
[Graphical view ]
SMARTi SM00922. MR_MLE. 1 hit.
[Graphical view ]
SUPFAMi SSF51604. SSF51604. 1 hit.
SSF54826. SSF54826. 1 hit.
PROSITEi PS00908. MR_MLE_1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Delftia acidovorans DSM 14801 / SPH-1."
    Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Lowry S., Clum A., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Schleheck D., Richardson P.
    Submitted (NOV-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 14801 / SPH-1.

Entry informationi

Entry nameiRHMD_DELAS
AccessioniPrimary (citable) accession number: A9BQY2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 14, 2008
Last sequence update: October 14, 2008
Last modified: June 11, 2014
This is version 36 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Miscellaneous

Reaction proceeds via a syn dehydration By similarity.

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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