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Protein

Pseudouridine synthase

Gene

Daci_5026

Organism
Delftia acidovorans (strain DSM 14801 / SPH-1)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Responsible for synthesis of pseudouridine from uracil.UniRule annotation

Catalytic activityi

RNA uridine = RNA pseudouridine.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionGlycosidaseImported, Hydrolase, IsomeraseUniRule annotationSAAS annotation, RNA-bindingSAAS annotation

Enzyme and pathway databases

BioCyciDACI398578:G1GAI-5181-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Pseudouridine synthaseUniRule annotation (EC:5.4.99.-UniRule annotation)
Gene namesi
Ordered Locus Names:Daci_5026Imported
OrganismiDelftia acidovorans (strain DSM 14801 / SPH-1)Imported
Taxonomic identifieri398578 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeDelftia
Proteomesi
  • UP000000784 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi398578.Daci_5026

Structurei

3D structure databases

ProteinModelPortaliA9BMW0
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini58 – 132S4 RNA-bindingInterPro annotationAdd BLAST75

Sequence similaritiesi

Belongs to the pseudouridine synthase RluA family.UniRule annotationSAAS annotation

Phylogenomic databases

eggNOGiENOG4105C34 Bacteria
COG0564 LUCA
HOGENOMiHOG000275919
KOiK06180
OMAiAHPSPGW

Family and domain databases

CDDicd02869 PseudoU_synth_RluCD_like, 1 hit
cd00165 S4, 1 hit
Gene3Di3.10.290.10, 1 hit
InterProiView protein in InterPro
IPR020103 PsdUridine_synth_cat_dom_sf
IPR006225 PsdUridine_synth_RluC/D
IPR006224 PsdUridine_synth_RluC/D_CS
IPR006145 PsdUridine_synth_RsuA/RluD
IPR002942 S4_RNA-bd
IPR036986 S4_RNA-bd_sf
PfamiView protein in Pfam
PF00849 PseudoU_synth_2, 1 hit
PF01479 S4, 1 hit
SUPFAMiSSF55120 SSF55120, 1 hit
TIGRFAMsiTIGR00005 rluA_subfam, 1 hit
PROSITEiView protein in PROSITE
PS01129 PSI_RLU, 1 hit
PS50889 S4, 1 hit

Sequencei

Sequence statusi: Complete.

A9BMW0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRSTRQTGQ APAPQGLVSS APGESPWEPV EDEAEGGEVE AAAAELREIT
60 70 80 90 100
VPPAQHGLRA DKVLAECVAE FSRSYLQQLL AQGAVTLNGR VLVKPATKVA
110 120 130 140 150
AGDRMVLEMR PTQQSMAFQP EDMALDVVYE DEHLLVVNKP AGLVVHPAPG
160 170 180 190 200
NWTGTLLNGL LGRDPKAREV PRAGIVHRLD KDTSGLMVVA RSRAAMDALV
210 220 230 240 250
AMIAARDVSR QYLALAHKAW GPRKHREVDA PIGRDPRNRL RMAVVDLAQH
260 270 280 290 300
AGKTARTDID LLAGNEEVSL VRCTLHTGRT HQIRVHMASL GHPLVADAVY
310 320 330 340 350
GGKEAGGMAR QALHAFRLAF THPMTGQALV LRAPLPPDMA QALENWGLSY

NPAESL
Length:356
Mass (Da):38,361
Last modified:January 15, 2008 - v1
Checksum:i00CF8BB135EE670E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000884 Genomic DNA Translation: ABX37655.1
RefSeqiWP_012206825.1, NC_010002.1

Genome annotation databases

EnsemblBacteriaiABX37655; ABX37655; Daci_5026
GeneIDi24118819
KEGGidac:Daci_5026

Similar proteinsi

Entry informationi

Entry nameiA9BMW0_DELAS
AccessioniPrimary (citable) accession number: A9BMW0
Entry historyiIntegrated into UniProtKB/TrEMBL: January 15, 2008
Last sequence update: January 15, 2008
Last modified: April 25, 2018
This is version 59 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health