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A9BMW0

- A9BMW0_DELAS

UniProt

A9BMW0 - A9BMW0_DELAS

Protein

Pseudouridine synthase

Gene

Daci_5026

Organism
Delftia acidovorans (strain DSM 14801 / SPH-1)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 40 (01 Oct 2014)
      Sequence version 1 (15 Jan 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. hydrolase activity, acting on glycosyl bonds Source: UniProtKB-KW
    2. pseudouridine synthase activity Source: InterPro
    3. RNA binding Source: InterPro

    GO - Biological processi

    1. pseudouridine synthesis Source: InterPro

    Keywords - Molecular functioni

    GlycosidaseImported, Hydrolase, IsomeraseUniRule annotation

    Enzyme and pathway databases

    BioCyciDACI398578:GHK3-5101-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Pseudouridine synthaseUniRule annotation (EC:5.4.99.-UniRule annotation)
    Gene namesi
    Ordered Locus Names:Daci_5026Imported
    OrganismiDelftia acidovorans (strain DSM 14801 / SPH-1)Imported
    Taxonomic identifieri398578 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeDelftia
    ProteomesiUP000000784: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi398578.Daci_5026.

    Structurei

    3D structure databases

    ProteinModelPortaliA9BMW0.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the pseudouridine synthase rluA family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0564.
    HOGENOMiHOG000275919.
    KOiK06180.
    OMAiDRKKQTV.
    OrthoDBiEOG6P070X.

    Family and domain databases

    Gene3Di3.10.290.10. 1 hit.
    InterProiIPR020103. PsdUridine_synth_cat_dom.
    IPR006225. PsdUridine_synth_RluC/D.
    IPR006224. PsdUridine_synth_RluC/D_CS.
    IPR006145. PsdUridine_synth_RsuA/RluD.
    IPR002942. S4_RNA-bd.
    [Graphical view]
    PfamiPF00849. PseudoU_synth_2. 1 hit.
    PF01479. S4. 1 hit.
    [Graphical view]
    SMARTiSM00363. S4. 1 hit.
    [Graphical view]
    SUPFAMiSSF55120. SSF55120. 1 hit.
    TIGRFAMsiTIGR00005. rluA_subfam. 1 hit.
    PROSITEiPS01129. PSI_RLU. 1 hit.
    PS50889. S4. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A9BMW0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSRSTRQTGQ APAPQGLVSS APGESPWEPV EDEAEGGEVE AAAAELREIT    50
    VPPAQHGLRA DKVLAECVAE FSRSYLQQLL AQGAVTLNGR VLVKPATKVA 100
    AGDRMVLEMR PTQQSMAFQP EDMALDVVYE DEHLLVVNKP AGLVVHPAPG 150
    NWTGTLLNGL LGRDPKAREV PRAGIVHRLD KDTSGLMVVA RSRAAMDALV 200
    AMIAARDVSR QYLALAHKAW GPRKHREVDA PIGRDPRNRL RMAVVDLAQH 250
    AGKTARTDID LLAGNEEVSL VRCTLHTGRT HQIRVHMASL GHPLVADAVY 300
    GGKEAGGMAR QALHAFRLAF THPMTGQALV LRAPLPPDMA QALENWGLSY 350
    NPAESL 356
    Length:356
    Mass (Da):38,361
    Last modified:January 15, 2008 - v1
    Checksum:i00CF8BB135EE670E
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000884 Genomic DNA. Translation: ABX37655.1.
    RefSeqiYP_001566040.1. NC_010002.1.

    Genome annotation databases

    EnsemblBacteriaiABX37655; ABX37655; Daci_5026.
    GeneIDi5750637.
    KEGGidac:Daci_5026.
    PATRICi21644073. VBIDelAci41351_5070.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000884 Genomic DNA. Translation: ABX37655.1 .
    RefSeqi YP_001566040.1. NC_010002.1.

    3D structure databases

    ProteinModelPortali A9BMW0.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 398578.Daci_5026.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABX37655 ; ABX37655 ; Daci_5026 .
    GeneIDi 5750637.
    KEGGi dac:Daci_5026.
    PATRICi 21644073. VBIDelAci41351_5070.

    Phylogenomic databases

    eggNOGi COG0564.
    HOGENOMi HOG000275919.
    KOi K06180.
    OMAi DRKKQTV.
    OrthoDBi EOG6P070X.

    Enzyme and pathway databases

    BioCyci DACI398578:GHK3-5101-MONOMER.

    Family and domain databases

    Gene3Di 3.10.290.10. 1 hit.
    InterProi IPR020103. PsdUridine_synth_cat_dom.
    IPR006225. PsdUridine_synth_RluC/D.
    IPR006224. PsdUridine_synth_RluC/D_CS.
    IPR006145. PsdUridine_synth_RsuA/RluD.
    IPR002942. S4_RNA-bd.
    [Graphical view ]
    Pfami PF00849. PseudoU_synth_2. 1 hit.
    PF01479. S4. 1 hit.
    [Graphical view ]
    SMARTi SM00363. S4. 1 hit.
    [Graphical view ]
    SUPFAMi SSF55120. SSF55120. 1 hit.
    TIGRFAMsi TIGR00005. rluA_subfam. 1 hit.
    PROSITEi PS01129. PSI_RLU. 1 hit.
    PS50889. S4. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Delftia acidovorans DSM 14801 / SPH-1."
      Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Lowry S., Clum A., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Schleheck D., Richardson P.
      Submitted (NOV-2007) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 14801 / SPH-1Imported.

    Entry informationi

    Entry nameiA9BMW0_DELAS
    AccessioniPrimary (citable) accession number: A9BMW0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: January 15, 2008
    Last sequence update: January 15, 2008
    Last modified: October 1, 2014
    This is version 40 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3