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A9BMW0

- A9BMW0_DELAS

UniProt

A9BMW0 - A9BMW0_DELAS

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Protein

Pseudouridine synthase

Gene
Daci_5026
Organism
Delftia acidovorans (strain DSM 14801 / SPH-1)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. hydrolase activity, acting on glycosyl bonds Source: UniProtKB-KW
  2. pseudouridine synthase activity Source: InterPro
  3. RNA binding Source: InterPro

GO - Biological processi

  1. pseudouridine synthesis Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseImported, Hydrolase, IsomeraseUniRule annotation

Enzyme and pathway databases

BioCyciDACI398578:GHK3-5101-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Pseudouridine synthaseUniRule annotation (EC:5.4.99.-UniRule annotation)
Gene namesi
Ordered Locus Names:Daci_5026Imported
OrganismiDelftia acidovorans (strain DSM 14801 / SPH-1)Imported
Taxonomic identifieri398578 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeDelftia
ProteomesiUP000000784: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi398578.Daci_5026.

Structurei

3D structure databases

ProteinModelPortaliA9BMW0.

Family & Domainsi

Sequence similaritiesi

Belongs to the pseudouridine synthase rluA family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0564.
HOGENOMiHOG000275919.
KOiK06180.
OMAiDRKKQTV.
OrthoDBiEOG6P070X.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
InterProiIPR020103. PsdUridine_synth_cat_dom.
IPR006225. PsdUridine_synth_RluC/D.
IPR006224. PsdUridine_synth_RluC/D_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view]
PfamiPF00849. PseudoU_synth_2. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTiSM00363. S4. 1 hit.
[Graphical view]
SUPFAMiSSF55120. SSF55120. 1 hit.
TIGRFAMsiTIGR00005. rluA_subfam. 1 hit.
PROSITEiPS01129. PSI_RLU. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A9BMW0-1 [UniParc]FASTAAdd to Basket

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MSRSTRQTGQ APAPQGLVSS APGESPWEPV EDEAEGGEVE AAAAELREIT    50
VPPAQHGLRA DKVLAECVAE FSRSYLQQLL AQGAVTLNGR VLVKPATKVA 100
AGDRMVLEMR PTQQSMAFQP EDMALDVVYE DEHLLVVNKP AGLVVHPAPG 150
NWTGTLLNGL LGRDPKAREV PRAGIVHRLD KDTSGLMVVA RSRAAMDALV 200
AMIAARDVSR QYLALAHKAW GPRKHREVDA PIGRDPRNRL RMAVVDLAQH 250
AGKTARTDID LLAGNEEVSL VRCTLHTGRT HQIRVHMASL GHPLVADAVY 300
GGKEAGGMAR QALHAFRLAF THPMTGQALV LRAPLPPDMA QALENWGLSY 350
NPAESL 356
Length:356
Mass (Da):38,361
Last modified:January 15, 2008 - v1
Checksum:i00CF8BB135EE670E
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000884 Genomic DNA. Translation: ABX37655.1.
RefSeqiYP_001566040.1. NC_010002.1.

Genome annotation databases

EnsemblBacteriaiABX37655; ABX37655; Daci_5026.
GeneIDi5750637.
KEGGidac:Daci_5026.
PATRICi21644073. VBIDelAci41351_5070.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000884 Genomic DNA. Translation: ABX37655.1 .
RefSeqi YP_001566040.1. NC_010002.1.

3D structure databases

ProteinModelPortali A9BMW0.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 398578.Daci_5026.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABX37655 ; ABX37655 ; Daci_5026 .
GeneIDi 5750637.
KEGGi dac:Daci_5026.
PATRICi 21644073. VBIDelAci41351_5070.

Phylogenomic databases

eggNOGi COG0564.
HOGENOMi HOG000275919.
KOi K06180.
OMAi DRKKQTV.
OrthoDBi EOG6P070X.

Enzyme and pathway databases

BioCyci DACI398578:GHK3-5101-MONOMER.

Family and domain databases

Gene3Di 3.10.290.10. 1 hit.
InterProi IPR020103. PsdUridine_synth_cat_dom.
IPR006225. PsdUridine_synth_RluC/D.
IPR006224. PsdUridine_synth_RluC/D_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view ]
Pfami PF00849. PseudoU_synth_2. 1 hit.
PF01479. S4. 1 hit.
[Graphical view ]
SMARTi SM00363. S4. 1 hit.
[Graphical view ]
SUPFAMi SSF55120. SSF55120. 1 hit.
TIGRFAMsi TIGR00005. rluA_subfam. 1 hit.
PROSITEi PS01129. PSI_RLU. 1 hit.
PS50889. S4. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Delftia acidovorans DSM 14801 / SPH-1."
    Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Lowry S., Clum A., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Schleheck D., Richardson P.
    Submitted (NOV-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 14801 / SPH-1.

Entry informationi

Entry nameiA9BMW0_DELAS
AccessioniPrimary (citable) accession number: A9BMW0
Entry historyi
Integrated into UniProtKB/TrEMBL: January 15, 2008
Last sequence update: January 15, 2008
Last modified: May 14, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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