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Protein

Pseudouridine synthase

Gene

Daci_5026

Organism
Delftia acidovorans (strain DSM 14801 / SPH-1)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Responsible for synthesis of pseudouridine from uracil.UniRule annotation

Catalytic activityi

RNA uridine = RNA pseudouridine.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseImported, Hydrolase, IsomeraseUniRule annotation

Enzyme and pathway databases

BioCyciDACI398578:GHK3-5101-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Pseudouridine synthaseUniRule annotation (EC:5.4.99.-UniRule annotation)
Gene namesi
Ordered Locus Names:Daci_5026Imported
OrganismiDelftia acidovorans (strain DSM 14801 / SPH-1)Imported
Taxonomic identifieri398578 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeDelftia
ProteomesiUP000000784 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi398578.Daci_5026.

Structurei

3D structure databases

ProteinModelPortaliA9BMW0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the pseudouridine synthase RluA family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0564.
HOGENOMiHOG000275919.
KOiK06180.
OMAiPSITHYE.
OrthoDBiEOG6P070X.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
InterProiIPR020103. PsdUridine_synth_cat_dom.
IPR006225. PsdUridine_synth_RluC/D.
IPR006224. PsdUridine_synth_RluC/D_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view]
PfamiPF00849. PseudoU_synth_2. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTiSM00363. S4. 1 hit.
[Graphical view]
SUPFAMiSSF55120. SSF55120. 1 hit.
TIGRFAMsiTIGR00005. rluA_subfam. 1 hit.
PROSITEiPS01129. PSI_RLU. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A9BMW0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRSTRQTGQ APAPQGLVSS APGESPWEPV EDEAEGGEVE AAAAELREIT
60 70 80 90 100
VPPAQHGLRA DKVLAECVAE FSRSYLQQLL AQGAVTLNGR VLVKPATKVA
110 120 130 140 150
AGDRMVLEMR PTQQSMAFQP EDMALDVVYE DEHLLVVNKP AGLVVHPAPG
160 170 180 190 200
NWTGTLLNGL LGRDPKAREV PRAGIVHRLD KDTSGLMVVA RSRAAMDALV
210 220 230 240 250
AMIAARDVSR QYLALAHKAW GPRKHREVDA PIGRDPRNRL RMAVVDLAQH
260 270 280 290 300
AGKTARTDID LLAGNEEVSL VRCTLHTGRT HQIRVHMASL GHPLVADAVY
310 320 330 340 350
GGKEAGGMAR QALHAFRLAF THPMTGQALV LRAPLPPDMA QALENWGLSY

NPAESL
Length:356
Mass (Da):38,361
Last modified:January 15, 2008 - v1
Checksum:i00CF8BB135EE670E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000884 Genomic DNA. Translation: ABX37655.1.
RefSeqiWP_012206825.1. NC_010002.1.
YP_001566040.1. NC_010002.1.

Genome annotation databases

EnsemblBacteriaiABX37655; ABX37655; Daci_5026.
KEGGidac:Daci_5026.
PATRICi21644073. VBIDelAci41351_5070.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000884 Genomic DNA. Translation: ABX37655.1.
RefSeqiWP_012206825.1. NC_010002.1.
YP_001566040.1. NC_010002.1.

3D structure databases

ProteinModelPortaliA9BMW0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi398578.Daci_5026.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABX37655; ABX37655; Daci_5026.
KEGGidac:Daci_5026.
PATRICi21644073. VBIDelAci41351_5070.

Phylogenomic databases

eggNOGiCOG0564.
HOGENOMiHOG000275919.
KOiK06180.
OMAiPSITHYE.
OrthoDBiEOG6P070X.

Enzyme and pathway databases

BioCyciDACI398578:GHK3-5101-MONOMER.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
InterProiIPR020103. PsdUridine_synth_cat_dom.
IPR006225. PsdUridine_synth_RluC/D.
IPR006224. PsdUridine_synth_RluC/D_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view]
PfamiPF00849. PseudoU_synth_2. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTiSM00363. S4. 1 hit.
[Graphical view]
SUPFAMiSSF55120. SSF55120. 1 hit.
TIGRFAMsiTIGR00005. rluA_subfam. 1 hit.
PROSITEiPS01129. PSI_RLU. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Delftia acidovorans DSM 14801 / SPH-1."
    Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Lowry S., Clum A., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Schleheck D., Richardson P.
    Submitted (NOV-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 14801 / SPH-1Imported.

Entry informationi

Entry nameiA9BMW0_DELAS
AccessioniPrimary (citable) accession number: A9BMW0
Entry historyi
Integrated into UniProtKB/TrEMBL: January 15, 2008
Last sequence update: January 15, 2008
Last modified: May 27, 2015
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.