A9BCP5 (A9BCP5_PROM4) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
50S ribosomal protein L23 HAMAP MF_01369

Gene names

Name:	rplW HAMAP MF_01369
Synonyms:	rpl23 HAMAP MF_01369
Ordered Locus Names:	P9211_16761

Organism

Prochlorococcus marinus (strain MIT 9211) [Complete proteome] [HAMAP] EMBL ABX09607.1

Taxonomic identifier

93059 [NCBI]

Taxonomic lineage

Bacteria › Cyanobacteria › Prochlorophytes › Prochlorococcaceae › Prochlorococcus

Protein attributes

Sequence length	97 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome By similarity. HAMAP MF_01369
Subunit structure	Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome By similarity. HAMAP MF_01369
Sequence similarities	Belongs to the ribosomal protein L23P family. HAMAP MF_01369

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding HAMAP MF_01369
Molecular function	Ribonucleoprotein Ribosomal protein HAMAP MF_01369 EMBL ABX09607.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: HAMAP
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	nucleotide binding Inferred from electronic annotation. Source: InterPro rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A9BCP5 [UniParc]. Last modified January 15, 2008. Version 1. Checksum: 283528E2FBB56691	FASTA	97	11,053
	10 20 30 40 50 60 MFKERLADVI RRPLITEKAT RGLDLNQYTF EVDPRAAKPD IKAAIEKMFD VKVIGISTMN 70 80 90 PPRRTRRVGR FAGKRSQVKK AIVRLAEGNT IQLFPEA

References

[1]

"Patterns and implications of gene gain and loss in the evolution of Prochlorococcus." Kettler G.C., Martiny A.C., Huang K., Zucker J., Coleman M.L., Rodrigue S., Chen F., Lapidus A., Ferriera S., Johnson J., Steglich C., Church G.M., Richardson P., Chisholm S.W. PLoS Genet. 3:2515-2528(2007) [PubMed: 18159947] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000878 Genomic DNA. Translation: ABX09607.1.
RefSeq	YP_001551561.1. NC_009976.1.
3D structure databases
ProteinModelPortal	A9BCP5.
ModBase	Search...
Protein-protein interaction databases
STRING	A9BCP5.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5730736.
GenomeReviews	Gene locus P9211_16761 in contig CP000878_GR.
KEGG	pmj:P9211_16761.
PATRIC	22989032. VBIProMar136502_1780.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG439330.
OMA	WKKAYVS.
PhylomeDB	A9BCP5.
ProtClustDB	PRK05738.
Family and domain databases
HAMAP	MF_01369_B. Ribosomal_L23_B. [Tree]
InterPro	IPR012677. Nucleotide-bd_a/b_plait. IPR012678. Ribosomal_L23/L15e_core_dom. IPR001014. Ribosomal_L23/L25_CS. IPR013025. Ribosomal_L25/23. [Graphical view]
Gene3D	G3DSA:3.30.70.330. a_b_plait_nuc_bd. 1 hit.
KO	K02892.
Pfam	PF00276. Ribosomal_L23. 1 hit. [Graphical view]
SUPFAM	SSF54189. L23_L15e_core. 1 hit.
PROSITE	PS00050. RIBOSOMAL_L23. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A9BCP5_PROM4

Accession

Primary (citable) accession number: A9BCP5

Entry history

Integrated into UniProtKB/TrEMBL:	January 15, 2008
Last sequence update:	January 15, 2008
Last modified:	December 14, 2011
This is version 25 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)