A9BAE5 (A9BAE5_PROM4) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Diaminopimelate epimerase HAMAP MF_00197
Short name=DAP epimerase HAMAP MF_00197
EC=5.1.1.7 HAMAP MF_00197

Gene names

Name:	dapF HAMAP MF_00197
Ordered Locus Names:	P9211_08761

Organism

Prochlorococcus marinus (strain MIT 9211) [Complete proteome] [HAMAP] EMBL ABX08807.1

Taxonomic identifier

93059 [NCBI]

Taxonomic lineage

Bacteria › Cyanobacteria › Prochlorophytes › Prochlorococcaceae › Prochlorococcus

Protein attributes

Sequence length	284 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	LL-2,6-diaminoheptanedioate = meso-diaminoheptanedioate. HAMAP MF_00197 SAAS SAAS018510
Pathway	Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; DL-2,6-diaminopimelate from LL-2,6-diaminopimelate: step 1/1. HAMAP MF_00197 SAAS SAAS018510
Subcellular location	Cytoplasm By similarity HAMAP MF_00197 SAAS SAAS018510.
Sequence similarities	Belongs to the diaminopimelate epimerase family. HAMAP MF_00197

Ontologies

Keywords
Biological process	Amino-acid biosynthesis Lysine biosynthesis HAMAP MF_00197 SAAS SAAS018510
Cellular component	Cytoplasm HAMAP MF_00197 SAAS SAAS018510
Molecular function	Isomerase HAMAP MF_00197 SAAS SAAS018510 EMBL ABX08807.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	lysine biosynthetic process via diaminopimelate Inferred from electronic annotation. Source: HAMAP
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	diaminopimelate epimerase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Sites
	Active site	80	1	By similarity HAMAP MF_00197
	Active site	227	1	By similarity HAMAP MF_00197

Sequences

	Sequence		Length	Mass (Da)
	A9BAE5 [UniParc]. Last modified January 15, 2008. Version 1. Checksum: 929D3F6A4B4F88D5	FASTA	284	31,201
	10 20 30 40 50 60 MTLIGFKKYH GLGNDFIIID GRFSLLPSSI VSAEKHLVIS LCKRHYGIGC DGIILILPPV 70 80 90 100 110 120 AGGDFRMKIF NSDGSEPEMC GNGIRCLIRY ILDDSEDDFV DSFIVETLAG KIQINIEEGN 130 140 150 160 170 180 IKVDMGSPIF APEKIPTTLP INERGIPQGR ITILDQDFLV SACSMGNPHA IIEVPTIKNI 190 200 210 220 230 240 PLYEWGQKLE THPVFPKYTN VHFVQVKSRS EIEILIWERG CGPTLACGTG ACACLAVLAK 250 260 270 280 LGKCNDLILV KLPGGELEIN WPKMKGSIFM IGDAKYVYSG SFNI

References

[1]

"Patterns and implications of gene gain and loss in the evolution of Prochlorococcus." Kettler G.C., Martiny A.C., Huang K., Zucker J., Coleman M.L., Rodrigue S., Chen F., Lapidus A., Ferriera S., Johnson J., Steglich C., Church G.M., Richardson P., Chisholm S.W. PLoS Genet. 3:2515-2528(2007) [PubMed: 18159947] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000878 Genomic DNA. Translation: ABX08807.1.
RefSeq	YP_001550761.1. NC_009976.1.
3D structure databases
ProteinModelPortal	A9BAE5.
ModBase	Search...
Protein-protein interaction databases
STRING	A9BAE5.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5730572.
GenomeReviews	Gene locus P9211_08761 in contig CP000878_GR.
KEGG	pmj:P9211_08761.
PATRIC	22987312. VBIProMar136502_0934.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG399442.
OMA	FMTGPAT.
PhylomeDB	A9BAE5.
Family and domain databases
HAMAP	MF_00197. DAP_epimerase. [Tree]
InterPro	IPR018510. DAP_epimerase_AS. IPR001653. DAP_epimerase_DapF. [Graphical view]
KO	K01778.
Pfam	PF01678. DAP_epimerase. 2 hits. [Graphical view]
TIGRFAMs	TIGR00652. DapF. 1 hit.
PROSITE	PS01326. DAP_EPIMERASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A9BAE5_PROM4

Accession

Primary (citable) accession number: A9BAE5

Entry history

Integrated into UniProtKB/TrEMBL:	January 15, 2008
Last sequence update:	January 15, 2008
Last modified:	December 14, 2011
This is version 32 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)