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A9B689 (ARAA_HERA2) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 32. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
L-arabinose isomerase
EC=5.3.1.4
Gene names
Name:araA
Ordered Locus Names:Haur_3664
OrganismHerpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) [Complete proteome] [HAMAP]
Taxonomic identifier316274 [NCBI]
Taxonomic lineageBacteria › Chloroflexi › Herpetosiphonales › Herpetosiphonaceae › Herpetosiphon

Protein attributes

Sequence length501 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the conversion of L-arabinose to L-ribulose By similarity. HAMAP MF_00519

Catalytic activity

L-arabinose = L-ribulose. HAMAP MF_00519

Cofactor

Binds 1 manganese ion per subunit By similarity. HAMAP MF_00519

Pathway

Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 1/3. HAMAP MF_00519

Sequence similarities

Belongs to the arabinose isomerase family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 501501L-arabinose isomerase HAMAP MF_00519
PRO_1000127608

Sites

Metal binding3061Manganese By similarity
Metal binding3331Manganese By similarity
Metal binding3501Manganese By similarity
Metal binding4491Manganese By similarity

Sequences

Sequence LengthMass (Da)Tools
A9B689 [UniParc].

Last modified January 15, 2008. Version 1.
Checksum: 9EE75BA6A5EEC7B8

FASTA50155,678
        10         20         30         40         50         60 
MLDLKQYEVW FITGSQHLYG PETLEQVAKH SQIIAAGLDQ SSTIPVRVVF KPVLKTPDEI 

        70         80         90        100        110        120 
YNLVLEANAA KNCIGLVAWM HTFSPAKMWI AGLRSLQKPL AHLHTQFNSE IPWSEIDMDF 

       130        140        150        160        170        180 
MNLNQAAHGD REFGFIVSRM RLERKVIVGH WQDSEVHDRI AAWTRAAAAW HDAQGARFAR 

       190        200        210        220        230        240 
FGDNMREVAV TEGDKVNAQM RLGYSVSGYG VGDLVRFVNE VSDADIDSTL QEYAEQYELA 

       250        260        270        280        290        300 
AGLQAGGEQH HSLREAARIE LGLRYFLEHG NFKGFTTTFE DLHGLVQLPG LGPQRLMDRG 

       310        320        330        340        350        360 
YGFAGEGDWK TAALVRAMKV MSAGLNGGTS FMEDYTYHFG SNGMKVLGAH MLEICPSIAA 

       370        380        390        400        410        420 
TKPRLEVHPL GIGGKADPVR MVFDAKTGPA VNASIVEMGN RLRLINSVVD AVETDQPLPK 

       430        440        450        460        470        480 
LPVARALWLP QPDLKTAAAA WIYAGGAHHT GFSFDLTSEH LADFAEIAGM EYLQIDRNTN 

       490        500 
VQQFKQELRW NDLYYHLAKG L

« Hide

References

[1]"Complete sequence of chromosome of Herpetosiphon aurantiacus ATCC 23779."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. expand/collapse author list , Kim E., Bryant D.A., Richardson P.
Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 23779 / DSM 785.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000875 Genomic DNA. Translation: ABX06300.1.
RefSeqYP_001546428.1. NC_009972.1.

3D structure databases

ProteinModelPortalA9B689.
SMRA9B689. Positions 1-497.
ModBaseSearch...

Protein-protein interaction databases

STRINGA9B689.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5735525.
GenomeReviewsGene locus Haur_3664 in contig CP000875_GR.
KEGGhau:Haur_3664.
PATRIC22124497. VBIHerAur93466_3767.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG297198.
OMAEVCPTIA.
ProtClustDBPRK02929.

Enzyme and pathway databases

BioCycHAUR316274:HAUR_3664-MONOMER.

Family and domain databases

HAMAPMF_00519. Arabinose_Isome.
[Tree]
InterProIPR024664. Ara_Isoase_C.
IPR004216. Fuc/Ara_isomerase_C.
IPR009015. Fucose_isomerase_N/cen.
IPR003762. Lara_isomerase.
[Graphical view]
KOK01804.
PfamPF11762. Arabinose_Iso_C. 1 hit.
PF02610. Arabinose_Isome. 1 hit.
[Graphical view]
PIRSFPIRSF001478. L-ara_isomerase. 1 hit.
ProDomPD018364. Lara_isomerase. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF50443. Fuc_isomerase_C. 1 hit.
SSF53743. Fuc_isomerase_N. 1 hit.
ProtoNetSearch...

Entry information

Entry nameARAA_HERA2
AccessionPrimary (citable) accession number: A9B689
Entry history
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: January 15, 2008
Last modified: January 25, 2012
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

PATHWAY comments

Index of metabolic and biosynthesis pathways

SIMILARITY comments

Index of protein domains and families

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