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A9B2L5 (A9B2L5_HERA2) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 44. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length548 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units. RuleBase RU361134

Sequence similarities

Belongs to the glycosyl hydrolase 13 family. RuleBase RU003615

Ontologies

Keywords
   Biological processCarbohydrate metabolism RuleBase RU361134
   Molecular functionGlycosidase RuleBase RU361134
Hydrolase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functioncatalytic activity

Inferred from electronic annotation. Source: InterPro

cation binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A9B2L5 [UniParc].

Last modified January 15, 2008. Version 1.
Checksum: 886F3C6F7E3D578C

FASTA54864,324
        10         20         30         40         50         60 
MQNDWYKDAI FYELHVRAFQ DSNGDGNGDF RGLISRLDYL QSLGVDCLWL LPFYPSPGKD 

        70         80         90        100        110        120 
DGYDVADYCN VHPSYGTMED VVTFFEAAHS RGLRVMIDLV VNHTSDQHPW FQAARQPDSP 

       130        140        150        160        170        180 
YRDYYVWSDT NQRYRDARII FTDTERSNWA WDEVSESYYW HRFFSHQPDL NYENPAVLEE 

       190        200        210        220        230        240 
MYNIMRFWLD RGVDGFRVDA VPYLIEREGT NCENLPETHV ILRKMREFVD QHYPHCVLLA 

       250        260        270        280        290        300 
EANQWPDDVR HYFGNDDEFH MAFNFPVMPR MFMAVRKEDS TPIIDIVRQT PKIPENCQWA 

       310        320        330        340        350        360 
TFLRNHDELT LEMVTDEERD YMYREYAADP RMKINIGIRR RLAPLMDNAR RRMELMNSML 

       370        380        390        400        410        420 
LSLPGSPIIY YGDEIGMGDN IYLGDRNGVR TPMQWNGDRN AGFSAADFAR LYSPVIIDPV 

       430        440        450        460        470        480 
YGYQAINVEA QERVQSSLLN WMKRLIRVRK RYSVFGRGDI QILETQNRKV LAYLRSYADQ 

       490        500        510        520        530        540 
TVLIVNNLSR FIQPVELDLA EFAGMRLVEL IGETPFPAIA TTPYFLSLAP HGFIWFRIEG 


VRLALDDA 

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References

[1]"Complete sequence of chromosome of Herpetosiphon aurantiacus ATCC 23779."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. expand/collapse author list , Kim E., Bryant D.A., Richardson P.
Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 23779 / DSM 785.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000875 Genomic DNA. Translation: ABX05466.1.
RefSeqYP_001545594.1. NC_009972.1.

3D structure databases

ProteinModelPortalA9B2L5.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING316274.Haur_2828.

Protein family/group databases

CAZyGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABX05466; ABX05466; Haur_2828.
GeneID5734709.
KEGGhau:Haur_2828.
PATRIC22122751. VBIHerAur93466_2900.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0366.
HOGENOMHOG000220639.
KOK05343.
OMAIMLAEAN.
OrthoDBEOG6RVFV2.

Enzyme and pathway databases

BioCycHAUR316274:GHYA-2859-MONOMER.

Family and domain databases

Gene3D2.60.40.1180. 1 hit.
3.20.20.80. 3 hits.
InterProIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR012810. TreS/a-amylase_N.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSPR00110. ALPHAAMYLASE.
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 2 hits.
TIGRFAMsTIGR02456. treS_nterm. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA9B2L5_HERA2
AccessionPrimary (citable) accession number: A9B2L5
Entry history
Integrated into UniProtKB/TrEMBL: January 15, 2008
Last sequence update: January 15, 2008
Last modified: July 9, 2014
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)