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Protein

Alpha-amylase

Gene

Haur_2828

Organism
Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

GO - Molecular functioni

  1. alpha-amylase activity Source: UniProtKB-EC
  2. cation binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotation, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Enzyme and pathway databases

BioCyciHAUR316274:GHYA-2859-MONOMER.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:Haur_2828Imported
OrganismiHerpetosiphon aurantiacus (strain ATCC 23779 / DSM 785)Imported
Taxonomic identifieri316274 [NCBI]
Taxonomic lineageiBacteriaChloroflexiChloroflexiaHerpetosiphonalesHerpetosiphonaceaeHerpetosiphon
ProteomesiUP000000787: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi316274.Haur_2828.

Structurei

3D structure databases

ProteinModelPortaliA9B2L5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000220639.
KOiK05343.
OMAiRMKANIG.
OrthoDBiEOG6RVFV2.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 3 hits.
InterProiIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR012810. TreS/a-amylase_N.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.
TIGRFAMsiTIGR02456. treS_nterm. 1 hit.

Sequencei

Sequence statusi: Complete.

A9B2L5-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MQNDWYKDAI FYELHVRAFQ DSNGDGNGDF RGLISRLDYL QSLGVDCLWL
60 70 80 90 100
LPFYPSPGKD DGYDVADYCN VHPSYGTMED VVTFFEAAHS RGLRVMIDLV
110 120 130 140 150
VNHTSDQHPW FQAARQPDSP YRDYYVWSDT NQRYRDARII FTDTERSNWA
160 170 180 190 200
WDEVSESYYW HRFFSHQPDL NYENPAVLEE MYNIMRFWLD RGVDGFRVDA
210 220 230 240 250
VPYLIEREGT NCENLPETHV ILRKMREFVD QHYPHCVLLA EANQWPDDVR
260 270 280 290 300
HYFGNDDEFH MAFNFPVMPR MFMAVRKEDS TPIIDIVRQT PKIPENCQWA
310 320 330 340 350
TFLRNHDELT LEMVTDEERD YMYREYAADP RMKINIGIRR RLAPLMDNAR
360 370 380 390 400
RRMELMNSML LSLPGSPIIY YGDEIGMGDN IYLGDRNGVR TPMQWNGDRN
410 420 430 440 450
AGFSAADFAR LYSPVIIDPV YGYQAINVEA QERVQSSLLN WMKRLIRVRK
460 470 480 490 500
RYSVFGRGDI QILETQNRKV LAYLRSYADQ TVLIVNNLSR FIQPVELDLA
510 520 530 540
EFAGMRLVEL IGETPFPAIA TTPYFLSLAP HGFIWFRIEG VRLALDDA
Length:548
Mass (Da):64,324
Last modified:January 15, 2008 - v1
Checksum:i886F3C6F7E3D578C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000875 Genomic DNA. Translation: ABX05466.1.
RefSeqiYP_001545594.1. NC_009972.1.

Genome annotation databases

EnsemblBacteriaiABX05466; ABX05466; Haur_2828.
GeneIDi5734709.
KEGGihau:Haur_2828.
PATRICi22122751. VBIHerAur93466_2900.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000875 Genomic DNA. Translation: ABX05466.1.
RefSeqiYP_001545594.1. NC_009972.1.

3D structure databases

ProteinModelPortaliA9B2L5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi316274.Haur_2828.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABX05466; ABX05466; Haur_2828.
GeneIDi5734709.
KEGGihau:Haur_2828.
PATRICi22122751. VBIHerAur93466_2900.

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000220639.
KOiK05343.
OMAiRMKANIG.
OrthoDBiEOG6RVFV2.

Enzyme and pathway databases

BioCyciHAUR316274:GHYA-2859-MONOMER.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 3 hits.
InterProiIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR012810. TreS/a-amylase_N.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.
TIGRFAMsiTIGR02456. treS_nterm. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome of Herpetosiphon aurantiacus ATCC 23779."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N.
    , Kim E., Bryant D.A., Richardson P.
    Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 23779 / DSM 785Imported.

Entry informationi

Entry nameiA9B2L5_HERA2
AccessioniPrimary (citable) accession number: A9B2L5
Entry historyi
Integrated into UniProtKB/TrEMBL: January 15, 2008
Last sequence update: January 15, 2008
Last modified: February 4, 2015
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.