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A9AZ24 (A9AZ24_HERA2) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Peptide deformylase 2 HAMAP MF_00163
Short name=PDF 2 HAMAP MF_00163
EC=3.5.1.88 HAMAP MF_00163
Alternative name(s):
Polypeptide deformylase 2 HAMAP MF_00163
Gene names
Name:def2 HAMAP MF_00163
Ordered Locus Names:Haur_4432
OrganismHerpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) [Complete proteome] [HAMAP]
Taxonomic identifier316274 [NCBI]
Taxonomic lineageBacteria › Chloroflexi › Herpetosiphonales › Herpetosiphonaceae › Herpetosiphon

Protein attributes

Sequence length211 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions By similarity. HAMAP MF_00163

Catalytic activity

Formyl-L-methionyl peptide + H2O = formate + methionyl peptide. HAMAP MF_00163 SAAS SAAS000181

Cofactor

Binds 1 Fe2+ ion By similarity. HAMAP MF_00163

Sequence similarities

Belongs to the polypeptide deformylase family. HAMAP MF_00163

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1561 By similarity HAMAP MF_00163
Metal binding1091Iron By similarity HAMAP MF_00163
Metal binding1551Iron By similarity HAMAP MF_00163
Metal binding1591Iron By similarity HAMAP MF_00163

Sequences

Sequence LengthMass (Da)Tools
A9AZ24 [UniParc].

Last modified January 15, 2008. Version 1.
Checksum: C81584741A40BEB0

FASTA21124,096
        10         20         30         40         50         60 
MAVRRVLQIE DPTDAVVLRA KAKRITSFDQ SLAGLVDDMI ETMREARGVG IAAPQVGVSR 

        70         80         90        100        110        120 
RVVVIEEPAQ YEEHEDGTQT QIAPAVLYVM VNPEIIKASE ETHMLQEGCL SLPGRYTKVP 

       130        140        150        160        170        180 
RNKWVTIKYY DLKGREQRLR HIPAEDYKVG HIAQHELDHL DGIMFTDRMT EESKLVDYRK 

       190        200        210 
ESESARLKRR GLLARKKRPD AELESESTTN E

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References

[1]"Complete sequence of chromosome of Herpetosiphon aurantiacus ATCC 23779."
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. expand/collapse author list , Kim E., Bryant D.A., Richardson P.
Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 23779 / DSM 785.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000875 Genomic DNA. Translation: ABX07064.1.
RefSeqYP_001547192.1. NC_009972.1.

3D structure databases

ProteinModelPortalA9AZ24.
ModBaseSearch...

Protein-protein interaction databases

STRINGA9AZ24.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5736283.
GenomeReviewsGene locus Haur_4432 in contig CP000875_GR.
KEGGhau:Haur_4432.
PATRIC22126119. VBIHerAur93466_4563.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG665227.
OMAVWEPIGE.
ProtClustDBCLSK973314.

Family and domain databases

HAMAPMF_00163. Pep_deformylase.
[Tree]
InterProIPR000181. Fmet_deformylase.
IPR023635. Peptide_deformylase.
[Graphical view]
Gene3DG3DSA:3.90.45.10. Fmet_deformylase. 1 hit.
KOK01462.
PANTHERPTHR10458. Fmet_deformylase. 1 hit.
PfamPF01327. Pep_deformylase. 1 hit.
[Graphical view]
PIRSFPIRSF004749. Pep_def. 1 hit.
PRINTSPR01576. PDEFORMYLASE.
SUPFAMSSF56420. Fmet_deformylase. 1 hit.
TIGRFAMsTIGR00079. Pept_deformyl. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA9AZ24_HERA2
AccessionPrimary (citable) accession number: A9AZ24
Entry history
Integrated into UniProtKB/TrEMBL: January 15, 2008
Last sequence update: January 15, 2008
Last modified: December 14, 2011
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info