Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

A9AVU7 (A9AVU7_HERA2) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 43. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein attributes

Sequence length596 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 13 family. RuleBase RU003615

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 3636 Potential EMBL ABX06697.1
Chain37 – 596560 Potential EMBL ABX06697.1
PRO_5000286045

Sequences

Sequence LengthMass (Da)Tools
A9AVU7 [UniParc].

Last modified January 15, 2008. Version 1.
Checksum: E03E668B49AB2662

FASTA59664,608
        10         20         30         40         50         60 
MSRTTRAMAR LTLFVLVVII FSVGFFGTAP RATQAQTTPR TAFVHLFEWK WTDIAKECEN 

        70         80         90        100        110        120 
WLGPKGFAAV QVSPPQEHIQ GSQWWTRYQP VSYQIQSRSG TRAEFANMVS RCKAVGVDIY 

       130        140        150        160        170        180 
VDAVINHMTG VGSGTGVAGS SYTSYNYPGN YQTQDFHHCG RNGNDDISNY QDRWEVQNCE 

       190        200        210        220        230        240 
LVNLADLKTE SDYVRGKLAA YLNDLRSLGV AGFRIDAAKH MPAADIANIM SRASNPYIYQ 

       250        260        270        280        290        300 
EVIDQGGEPI TSGEYTGNGD VTEFKYSTNI GRMFKTDKLA NMSNFGTAWG FIASDSAVVF 

       310        320        330        340        350        360 
TDNHDNQRGH GGAGNVVTFK DGKLYELANV FALAWPYGYP QVMSSYNFSN GDQGPPSSNV 

       370        380        390        400        410        420 
YNGNTADCGG SNWVCEHRWR GIANMVGFRN YTSTAFSTSN WWSNGNNQIS FSRGSLGFVA 

       430        440        450        460        470        480 
INREGSSLSR TFATGLPAGT YCDVIHGDFN NGSCSGPTIS VNSSGQATIT VAAMDSVAIH 

       490        500        510        520        530        540 
GGAKINGTNP TPVPTTPPSG SIAVTFNENA TTVWGQNVYV IGNVSALGSW NTANAVLLSS 

       550        560        570        580        590 
ASYPVWSKTI NLPASTAIEY KYIKKDGSGN VTWESGSNRT FTTPSSGTVT RNDTWK 

« Hide

References

[1]"Complete sequence of chromosome of Herpetosiphon aurantiacus ATCC 23779."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. expand/collapse author list , Kim E., Bryant D.A., Richardson P.
Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 23779 / DSM 785.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000875 Genomic DNA. Translation: ABX06697.1.
RefSeqYP_001546825.1. NC_009972.1.

3D structure databases

ProteinModelPortalA9AVU7.
SMRA9AVU7. Positions 41-486.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING316274.Haur_4065.

Protein family/group databases

CAZyCBM20. Carbohydrate-Binding Module Family 20.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABX06697; ABX06697; Haur_4065.
GeneID5735923.
KEGGhau:Haur_4065.
PATRIC22125345. VBIHerAur93466_4186.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0366.
HOGENOMHOG000253313.
KOK01176.
OMAGQNIFVV.
OrthoDBEOG6RZB1B.
ProtClustDBCLSK983880.

Enzyme and pathway databases

BioCycHAUR316274:GHYA-4108-MONOMER.

Family and domain databases

Gene3D2.60.40.10. 1 hit.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProIPR006048. A-amylase_b_C.
IPR006046. Alpha_amylase.
IPR013784. Carb-bd-like_fold.
IPR002044. CBM_fam20.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF00686. CBM_20. 1 hit.
[Graphical view]
PRINTSPR00110. ALPHAAMYLASE.
SMARTSM00642. Aamy. 1 hit.
SM00632. Aamy_C. 1 hit.
SM01065. CBM_2. 1 hit.
[Graphical view]
SUPFAMSSF49452. SSF49452. 1 hit.
SSF51445. SSF51445. 1 hit.
PROSITEPS51166. CBM20. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA9AVU7_HERA2
AccessionPrimary (citable) accession number: A9AVU7
Entry history
Integrated into UniProtKB/TrEMBL: January 15, 2008
Last sequence update: January 15, 2008
Last modified: November 13, 2013
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)