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Protein

Alpha-amylase

Gene

Haur_4065

Organism
Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

GO - Molecular functioni

  1. alpha-amylase activity Source: UniProtKB-EC
  2. cation binding Source: InterPro
  3. starch binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotationImported, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Enzyme and pathway databases

BioCyciHAUR316274:GHYA-4108-MONOMER.

Protein family/group databases

CAZyiCBM20. Carbohydrate-Binding Module Family 20.
GH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:Haur_4065Imported
OrganismiHerpetosiphon aurantiacus (strain ATCC 23779 / DSM 785)Imported
Taxonomic identifieri316274 [NCBI]
Taxonomic lineageiBacteriaChloroflexiChloroflexiaHerpetosiphonalesHerpetosiphonaceaeHerpetosiphon
ProteomesiUP000000787: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3636 PotentialImportedAdd
BLAST
Chaini37 – 596560 PotentialImportedPRO_5000286045Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi316274.Haur_4065.

Structurei

3D structure databases

ProteinModelPortaliA9AVU7.
SMRiA9AVU7. Positions 41-486.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Keywords - Domaini

SignalImported

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000253313.
KOiK01176.
OMAiGQNIFVV.
OrthoDBiEOG6RZB1B.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR006048. A-amylase_b_C.
IPR006046. Alpha_amylase.
IPR013784. Carb-bd-like_fold.
IPR002044. CBM_fam20.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF00686. CBM_20. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
SM00632. Aamy_C. 1 hit.
SM01065. CBM_2. 1 hit.
[Graphical view]
SUPFAMiSSF49452. SSF49452. 1 hit.
SSF51445. SSF51445. 1 hit.
PROSITEiPS51166. CBM20. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

A9AVU7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRTTRAMAR LTLFVLVVII FSVGFFGTAP RATQAQTTPR TAFVHLFEWK
60 70 80 90 100
WTDIAKECEN WLGPKGFAAV QVSPPQEHIQ GSQWWTRYQP VSYQIQSRSG
110 120 130 140 150
TRAEFANMVS RCKAVGVDIY VDAVINHMTG VGSGTGVAGS SYTSYNYPGN
160 170 180 190 200
YQTQDFHHCG RNGNDDISNY QDRWEVQNCE LVNLADLKTE SDYVRGKLAA
210 220 230 240 250
YLNDLRSLGV AGFRIDAAKH MPAADIANIM SRASNPYIYQ EVIDQGGEPI
260 270 280 290 300
TSGEYTGNGD VTEFKYSTNI GRMFKTDKLA NMSNFGTAWG FIASDSAVVF
310 320 330 340 350
TDNHDNQRGH GGAGNVVTFK DGKLYELANV FALAWPYGYP QVMSSYNFSN
360 370 380 390 400
GDQGPPSSNV YNGNTADCGG SNWVCEHRWR GIANMVGFRN YTSTAFSTSN
410 420 430 440 450
WWSNGNNQIS FSRGSLGFVA INREGSSLSR TFATGLPAGT YCDVIHGDFN
460 470 480 490 500
NGSCSGPTIS VNSSGQATIT VAAMDSVAIH GGAKINGTNP TPVPTTPPSG
510 520 530 540 550
SIAVTFNENA TTVWGQNVYV IGNVSALGSW NTANAVLLSS ASYPVWSKTI
560 570 580 590
NLPASTAIEY KYIKKDGSGN VTWESGSNRT FTTPSSGTVT RNDTWK
Length:596
Mass (Da):64,608
Last modified:January 15, 2008 - v1
Checksum:iE03E668B49AB2662
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000875 Genomic DNA. Translation: ABX06697.1.
RefSeqiYP_001546825.1. NC_009972.1.

Genome annotation databases

EnsemblBacteriaiABX06697; ABX06697; Haur_4065.
GeneIDi5735923.
KEGGihau:Haur_4065.
PATRICi22125345. VBIHerAur93466_4186.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000875 Genomic DNA. Translation: ABX06697.1.
RefSeqiYP_001546825.1. NC_009972.1.

3D structure databases

ProteinModelPortaliA9AVU7.
SMRiA9AVU7. Positions 41-486.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi316274.Haur_4065.

Protein family/group databases

CAZyiCBM20. Carbohydrate-Binding Module Family 20.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABX06697; ABX06697; Haur_4065.
GeneIDi5735923.
KEGGihau:Haur_4065.
PATRICi22125345. VBIHerAur93466_4186.

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000253313.
KOiK01176.
OMAiGQNIFVV.
OrthoDBiEOG6RZB1B.

Enzyme and pathway databases

BioCyciHAUR316274:GHYA-4108-MONOMER.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR006048. A-amylase_b_C.
IPR006046. Alpha_amylase.
IPR013784. Carb-bd-like_fold.
IPR002044. CBM_fam20.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF00686. CBM_20. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
SM00632. Aamy_C. 1 hit.
SM01065. CBM_2. 1 hit.
[Graphical view]
SUPFAMiSSF49452. SSF49452. 1 hit.
SSF51445. SSF51445. 1 hit.
PROSITEiPS51166. CBM20. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome of Herpetosiphon aurantiacus ATCC 23779."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N.
    , Kim E., Bryant D.A., Richardson P.
    Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 23779 / DSM 785Imported.

Entry informationi

Entry nameiA9AVU7_HERA2
AccessioniPrimary (citable) accession number: A9AVU7
Entry historyi
Integrated into UniProtKB/TrEMBL: January 15, 2008
Last sequence update: January 15, 2008
Last modified: March 4, 2015
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.