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Protein
Submitted name:

DNA polymerase LigD, ligase domain protein

Gene

Bmul_6253

Organism
Burkholderia multivorans (strain ATCC 17616 / 249)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, ligase domain proteinImported
Gene namesi
Ordered Locus Names:Bmul_6253Imported
Encoded oniPlasmid pBMUL01Imported
OrganismiBurkholderia multivorans (strain ATCC 17616 / 249)Imported
Taxonomic identifieri395019 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiaBurkholderia cepacia complex
ProteomesiUP000007064 Componenti: Plasmid pBMUL01

Interactioni

Protein-protein interaction databases

STRINGi395019.Bmul_6253.

Structurei

3D structure databases

ProteinModelPortaliA9AU40.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222509.
OMAiVEVKYGQ.
OrthoDBiEOG6BW4VZ.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A9AU40-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQRRTTAQKT RAGVVVAKNA RMSEFIAPAL AVLMSEPPPA GDWAYEIKFD
60 70 80 90 100
GYRMLVRVDD GDVRLYTRNG HDWTSKLPHL TAVLKRLPVQ RAWLDAEAVC
110 120 130 140 150
FAPDGRPNFS RLQEAFNSRR TTGICLVVFD LMWIDDTDLR RRPWHERRSA
160 170 180 190 200
LTGIIGEVLR EEVRFSEAIE ADASAMLASA CELGLEGIIG KQIDAPYRSG
210 220 230 240 250
RSDRWIKLKC VRRQEFVIGG FSRRKGATAG VRALLLGVYE EGGRLRYVGH
260 270 280 290 300
VAPSFTPRQA REFESRLSAL GRKRSPFASA PDPEVDREFH WLKPDLVAEV
310 320 330 340
AFLEWTPAGR LRHPSFCGLR ADKPARTVSR ENPASPKGAG SRR
Length:343
Mass (Da):38,582
Last modified:January 15, 2008 - v1
Checksum:iA0A04D19258EE321
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000871 Genomic DNA. Translation: ABX19906.1.
RefSeqiWP_012211059.1. NC_010070.1.
YP_001573706.1. NC_010070.1.

Genome annotation databases

EnsemblBacteriaiABX19906; ABX19906; Bmul_6253.
KEGGibmu:Bmul_6253.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000871 Genomic DNA. Translation: ABX19906.1.
RefSeqiWP_012211059.1. NC_010070.1.
YP_001573706.1. NC_010070.1.

3D structure databases

ProteinModelPortaliA9AU40.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi395019.Bmul_6253.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABX19906; ABX19906; Bmul_6253.
KEGGibmu:Bmul_6253.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222509.
OMAiVEVKYGQ.
OrthoDBiEOG6BW4VZ.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of plasmid 1 of Burkholderia multivorans ATCC 17616."
    Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Tiedje J., Richardson P.
    Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 17616 / 249Imported.

Entry informationi

Entry nameiA9AU40_BURM1
AccessioniPrimary (citable) accession number: A9AU40
Entry historyi
Integrated into UniProtKB/TrEMBL: January 15, 2008
Last sequence update: January 15, 2008
Last modified: May 27, 2015
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported, PlasmidImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.