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A9ATU7

- A9ATU7_BURM1

UniProt

A9ATU7 - A9ATU7_BURM1

Protein
Submitted name:

DNA ligase D

Gene

Bmul_5476

Organism
Burkholderia multivorans (strain ATCC 17616 / 249)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 46 (01 Oct 2014)
      Sequence version 1 (15 Jan 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciBMUL395019:GIYO-6016-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Submitted name:
    Putative ATP-dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:Bmul_5476Imported, BMULJ_06021Imported
    OrganismiBurkholderia multivorans (strain ATCC 17616 / 249)Imported
    Taxonomic identifieri395019 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiaBurkholderia cepacia complex
    ProteomesiUP000008815: Chromosome 3, UP000007064: Chromosome 3

    Interactioni

    Protein-protein interaction databases

    STRINGi395019.Bmul_5476.

    Structurei

    3D structure databases

    SMRiA9ATU7. Positions 635-924.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiNGLPDFQ.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A9ATU7-1 [UniParc]FASTAAdd to Basket

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    MAGKLDPYRR KRHFDATPEP EGTRRRRAPA DAQPAERGRH PLRYVIQEHH    50
    ARRLHYDFRL ELDGTLKSWA VPKGPSFDPS VKRLAVHVED HPLEYASFEG 100
    EIPAGHYGAG SVIVWDEGTW TPEGGLAKAR EGYRAGKLKF RLDGEKLHGG 150
    WALVRSGRQE GRQEQWLLIK ERDDDARSAE AYDVVAQQPG SVHDGATRGH 200
    ATNGHARARR RGEKAAGKEP DAEADADTDA DAPRARATKA KRPPALSRVE 250
    GAVRAPLPER IAPQLATLVD APPAHGDWRY ELKFDGYRML ARIAGKGARR 300
    RVTLMTREGR DWTPKLRALR DALAALEVDD AWLDGEAVVL GENGLPDFQL 350
    LQNALGSGQS DAVTLFVFDL PYLNGYDLRD APLTARRAQL EPLFDAADPA 400
    RLRFSPDLGS DAAGLIANAC DTGLEGLIGK RADARYRAGR SPAWIKLKCR 450
    RRQEFVIGGY TEPTGSRHGF GALLLGVHEP APNGKRTRGA SPLRYVGRVG 500
    TGFDTRMLDK LAPLLREHER ASSPFDPPPQ GWSRTRVHWV EPTLVAECEF 550
    AEWTGDGIVR QAAFVALRED KPASQIVREV ARHPTTENTM DERTSSSARR 600
    GRAAADTHDG GQDRAQHRAQ ERAPAARGKS APDQVGQVRI THPERVLDRE 650
    SGTRKIDLAH YWERVAPWAL PDLAGRPVSL VRAPQDIGGE LFFQKHAERR 700
    EIPFVTQHPG LDPGHGPLLS IDSVDALIGA AQMGTIELHT WNAHASNIER 750
    PDRIVFDLDP DPALPWRTMI EAAQLVRGLL DELGLVSFCK TSGGKGLHVV 800
    VPITRHSGWD EMKDFSRAVA QHIAGALPDR FTATMGPRHR RGKIFIDYLR 850
    NGRGASTIAA YSVRARPGMG VSVPIDWDEV PATTGGAQWT IDTVHERLDA 900
    LERDPWEAYA DTRQRITAAM RTRLAAR 927
    Length:927
    Mass (Da):102,490
    Last modified:January 15, 2008 - v1
    Checksum:i61DB9CD1D929FD4A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000870 Genomic DNA. Translation: ABX19146.1.
    AP009387 Genomic DNA. Translation: BAG47822.1.
    RefSeqiWP_012217890.1. NC_010801.1.
    YP_001585438.1. NC_010087.1.
    YP_001941812.1. NC_010801.1.

    Genome annotation databases

    EnsemblBacteriaiABX19146; ABX19146; Bmul_5476.
    BAG47822; BAG47822; BMULJ_06021.
    GeneIDi5770842.
    6356742.
    KEGGibmj:BMULJ_06021.
    bmu:Bmul_5476.
    PATRICi19161091. VBIBurMul203716_0661.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000870 Genomic DNA. Translation: ABX19146.1 .
    AP009387 Genomic DNA. Translation: BAG47822.1 .
    RefSeqi WP_012217890.1. NC_010801.1.
    YP_001585438.1. NC_010087.1.
    YP_001941812.1. NC_010801.1.

    3D structure databases

    SMRi A9ATU7. Positions 635-924.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 395019.Bmul_5476.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABX19146 ; ABX19146 ; Bmul_5476 .
    BAG47822 ; BAG47822 ; BMULJ_06021 .
    GeneIDi 5770842.
    6356742.
    KEGGi bmj:BMULJ_06021.
    bmu:Bmul_5476.
    PATRICi 19161091. VBIBurMul203716_0661.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi NGLPDFQ.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci BMUL395019:GIYO-6016-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of Burkholderia multivorans ATCC 17616."
      Ohtsubo Y., Yamashita A., Kurokawa K., Takami H., Yuhara S., Nishiyama E., Endo R., Miyazaki R., Ono A., Yano K., Ito M., Sota M., Yuji N., Hattori M., Tsuda M.
      Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 17616Imported and ATCC 17616 / 249Imported.
    2. "Complete sequence of chromosome 3 of Burkholderia multivorans ATCC 17616."
      Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Tiedje J., Richardson P.
      Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 17616 / 249Imported.
    3. "Complete sequence of chromosome3 of Burkholderia multivorans ATCC 17616."
      US DOE Joint Genome Institute
      Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Tiedje J., Richardson P.
      Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: ATCC 17616Imported.

    Entry informationi

    Entry nameiA9ATU7_BURM1
    AccessioniPrimary (citable) accession number: A9ATU7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: January 15, 2008
    Last sequence update: January 15, 2008
    Last modified: October 1, 2014
    This is version 46 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3