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A9ATU7

- A9ATU7_BURM1

UniProt

A9ATU7 - A9ATU7_BURM1

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Protein
Submitted name:

DNA ligase D

Gene

Bmul_5476

Organism
Burkholderia multivorans (strain ATCC 17616 / 249)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBMUL395019:GIYO-6016-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Submitted name:
Putative ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Bmul_5476Imported, BMULJ_06021Imported
OrganismiBurkholderia multivorans (strain ATCC 17616 / 249)Imported
Taxonomic identifieri395019 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiaBurkholderia cepacia complex
ProteomesiUP000008815: Chromosome 3, UP000007064: Chromosome 3

Interactioni

Protein-protein interaction databases

STRINGi395019.Bmul_5476.

Structurei

3D structure databases

ProteinModelPortaliA9ATU7.
SMRiA9ATU7. Positions 635-924.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiNGLPDFQ.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A9ATU7-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAGKLDPYRR KRHFDATPEP EGTRRRRAPA DAQPAERGRH PLRYVIQEHH
60 70 80 90 100
ARRLHYDFRL ELDGTLKSWA VPKGPSFDPS VKRLAVHVED HPLEYASFEG
110 120 130 140 150
EIPAGHYGAG SVIVWDEGTW TPEGGLAKAR EGYRAGKLKF RLDGEKLHGG
160 170 180 190 200
WALVRSGRQE GRQEQWLLIK ERDDDARSAE AYDVVAQQPG SVHDGATRGH
210 220 230 240 250
ATNGHARARR RGEKAAGKEP DAEADADTDA DAPRARATKA KRPPALSRVE
260 270 280 290 300
GAVRAPLPER IAPQLATLVD APPAHGDWRY ELKFDGYRML ARIAGKGARR
310 320 330 340 350
RVTLMTREGR DWTPKLRALR DALAALEVDD AWLDGEAVVL GENGLPDFQL
360 370 380 390 400
LQNALGSGQS DAVTLFVFDL PYLNGYDLRD APLTARRAQL EPLFDAADPA
410 420 430 440 450
RLRFSPDLGS DAAGLIANAC DTGLEGLIGK RADARYRAGR SPAWIKLKCR
460 470 480 490 500
RRQEFVIGGY TEPTGSRHGF GALLLGVHEP APNGKRTRGA SPLRYVGRVG
510 520 530 540 550
TGFDTRMLDK LAPLLREHER ASSPFDPPPQ GWSRTRVHWV EPTLVAECEF
560 570 580 590 600
AEWTGDGIVR QAAFVALRED KPASQIVREV ARHPTTENTM DERTSSSARR
610 620 630 640 650
GRAAADTHDG GQDRAQHRAQ ERAPAARGKS APDQVGQVRI THPERVLDRE
660 670 680 690 700
SGTRKIDLAH YWERVAPWAL PDLAGRPVSL VRAPQDIGGE LFFQKHAERR
710 720 730 740 750
EIPFVTQHPG LDPGHGPLLS IDSVDALIGA AQMGTIELHT WNAHASNIER
760 770 780 790 800
PDRIVFDLDP DPALPWRTMI EAAQLVRGLL DELGLVSFCK TSGGKGLHVV
810 820 830 840 850
VPITRHSGWD EMKDFSRAVA QHIAGALPDR FTATMGPRHR RGKIFIDYLR
860 870 880 890 900
NGRGASTIAA YSVRARPGMG VSVPIDWDEV PATTGGAQWT IDTVHERLDA
910 920
LERDPWEAYA DTRQRITAAM RTRLAAR
Length:927
Mass (Da):102,490
Last modified:January 15, 2008 - v1
Checksum:i61DB9CD1D929FD4A
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000870 Genomic DNA. Translation: ABX19146.1.
AP009387 Genomic DNA. Translation: BAG47822.1.
RefSeqiYP_001585438.1. NC_010087.1.
YP_001941812.1. NC_010801.1.

Genome annotation databases

EnsemblBacteriaiABX19146; ABX19146; Bmul_5476.
BAG47822; BAG47822; BMULJ_06021.
GeneIDi5770842.
6356742.
KEGGibmj:BMULJ_06021.
bmu:Bmul_5476.
PATRICi19161091. VBIBurMul203716_0661.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000870 Genomic DNA. Translation: ABX19146.1 .
AP009387 Genomic DNA. Translation: BAG47822.1 .
RefSeqi YP_001585438.1. NC_010087.1.
YP_001941812.1. NC_010801.1.

3D structure databases

ProteinModelPortali A9ATU7.
SMRi A9ATU7. Positions 635-924.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 395019.Bmul_5476.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABX19146 ; ABX19146 ; Bmul_5476 .
BAG47822 ; BAG47822 ; BMULJ_06021 .
GeneIDi 5770842.
6356742.
KEGGi bmj:BMULJ_06021.
bmu:Bmul_5476.
PATRICi 19161091. VBIBurMul203716_0661.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi NGLPDFQ.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci BMUL395019:GIYO-6016-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome sequence of Burkholderia multivorans ATCC 17616."
    Ohtsubo Y., Yamashita A., Kurokawa K., Takami H., Yuhara S., Nishiyama E., Endo R., Miyazaki R., Ono A., Yano K., Ito M., Sota M., Yuji N., Hattori M., Tsuda M.
    Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 17616Imported and ATCC 17616 / 249Imported.
  2. "Complete sequence of chromosome 3 of Burkholderia multivorans ATCC 17616."
    Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Tiedje J., Richardson P.
    Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 17616 / 249Imported.
  3. "Complete sequence of chromosome3 of Burkholderia multivorans ATCC 17616."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Tiedje J., Richardson P.
    Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: ATCC 17616Imported.

Entry informationi

Entry nameiA9ATU7_BURM1
AccessioniPrimary (citable) accession number: A9ATU7
Entry historyi
Integrated into UniProtKB/TrEMBL: January 15, 2008
Last sequence update: January 15, 2008
Last modified: October 29, 2014
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3