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Protein

dCTP deaminase, dUMP-forming

Gene

dcd

Organism
Methanococcus maripaludis (strain C6 / ATCC BAA-1332)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Bifunctional enzyme that catalyzes both the deamination of dCTP to dUTP and the hydrolysis of dUTP to dUMP without releasing the toxic dUTP intermediate.UniRule annotation

Catalytic activityi

dCTP + 2 H2O = dUMP + diphosphate + NH3.UniRule annotation

Pathwayi: dUMP biosynthesis

This protein is involved in step 1 of the subpathway that synthesizes dUMP from dCTP.UniRule annotation
Proteins known to be involved in this subpathway in this organism are:
  1. dCTP deaminase, dUMP-forming (dcd)
This subpathway is part of the pathway dUMP biosynthesis, which is itself part of Pyrimidine metabolism.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes dUMP from dCTP, the pathway dUMP biosynthesis and in Pyrimidine metabolism.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sitei132 – 133Important for bifunctional activityUniRule annotation2
Binding sitei135dCTPUniRule annotation1
Active sitei145Proton donor/acceptorUniRule annotation1
Binding sitei163dCTPUniRule annotation1
Binding sitei177dCTPUniRule annotation1
Binding sitei184dCTPUniRule annotation1
Binding sitei188dCTPUniRule annotation1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi117 – 122dCTP bindingUniRule annotation6
Nucleotide bindingi143 – 145dCTP bindingUniRule annotation3

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionHydrolase
Biological processNucleotide metabolism
LigandNucleotide-binding

Enzyme and pathway databases

BioCyciMMAR444158:G1GAE-1282-MONOMER
UniPathwayiUPA00610; UER00667

Names & Taxonomyi

Protein namesi
Recommended name:
dCTP deaminase, dUMP-formingUniRule annotation (EC:3.5.4.30UniRule annotation)
Alternative name(s):
Bifunctional dCTP deaminase:dUTPaseUniRule annotation
DCD-DUTUniRule annotation
Gene namesi
Name:dcdUniRule annotation
Ordered Locus Names:MmarC6_1247
OrganismiMethanococcus maripaludis (strain C6 / ATCC BAA-1332)
Taxonomic identifieri444158 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanococciMethanococcalesMethanococcaceaeMethanococcus
Proteomesi
  • UP000000791 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10000964381 – 206dCTP deaminase, dUMP-formingAdd BLAST206

Interactioni

Subunit structurei

Homotrimer.UniRule annotation

Protein-protein interaction databases

STRINGi444158.MmarC6_1247

Structurei

3D structure databases

ProteinModelPortaliA9A9N7
SMRiA9A9N7
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the dCTP deaminase family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04048 Archaea
COG0717 LUCA
HOGENOMiHOG000228601
KOiK09887
OMAiGWIDAGF
OrthoDBiPOG093Z0C6C

Family and domain databases

CDDicd07557 trimeric_dUTPase, 1 hit
Gene3Di2.70.40.10, 1 hit
HAMAPiMF_00146 dCTP_deaminase, 1 hit
InterProiView protein in InterPro
IPR011962 dCTP_deaminase
IPR029054 dUTPase-like
IPR036157 dUTPase-like_sf
IPR033704 dUTPase_trimeric
PfamiView protein in Pfam
PF00692 dUTPase, 1 hit
SUPFAMiSSF51283 SSF51283, 1 hit
TIGRFAMsiTIGR02274 dCTP_deam, 1 hit

Sequencei

Sequence statusi: Complete.

A9A9N7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MILSDKDIFD YVNSKRVLIE PFNSKFVGPC SYDVTLGSEF IKYKDDVYDL
60 70 80 90 100
KKNLSHNKFE IENSIMVCPL NHHLDETIIE NYKEKYNVDC VVSGGLLGTT
110 120 130 140 150
NEYVELPNDV CAQYQGRSSF GRVFLQTHQT AGWIDSGFKG KITLEIVAYD
160 170 180 190 200
KPVILYKNQR VGQLIFSKTL SPADIGYSDR KCSKYAGQKS VMASLIKKDF

EIDEEE
Length:206
Mass (Da):23,485
Last modified:January 15, 2008 - v1
Checksum:i700C1C02779D5806
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000867 Genomic DNA Translation: ABX02060.1
RefSeqiWP_012193996.1, NC_009975.1

Genome annotation databases

EnsemblBacteriaiABX02060; ABX02060; MmarC6_1247
GeneIDi5738140
KEGGimmx:MmarC6_1247

Similar proteinsi

Entry informationi

Entry nameiDCDB_METM6
AccessioniPrimary (citable) accession number: A9A9N7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 24, 2009
Last sequence update: January 15, 2008
Last modified: April 25, 2018
This is version 65 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome
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Main funding by: National Institutes of Health