A8Y9H3 (NDHJ_LOLPR) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
NAD(P)H-quinone oxidoreductase subunit J, chloroplastic
EC=1.6.5.-

Alternative name(s):
NAD(P)H dehydrogenase subunit J
NADH-plastoquinone oxidoreductase subunit J

Gene names

Name:	ndhJ
Ordered Locus Names:	LopeCp041

Encoded on

Plastid; Chloroplast

Organism

Lolium perenne (Perennial ryegrass)

Taxonomic identifier

4522 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › BEP clade › Pooideae › Poeae › Loliinae › Lolium

Protein attributes

Sequence length	159 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient By similarity. HAMAP MF_01357
Catalytic activity	NAD(P)H + plastoquinone = NAD(P)+ + plastoquinol. HAMAP MF_01357
Subunit structure	NDH is composed of at least 16 different subunits, 5 of which are encoded in the nucleus By similarity.
Subcellular location	Plastid › chloroplast thylakoid membrane; Peripheral membrane protein; Stromal side By similarity HAMAP MF_01357.
Sequence similarities	Belongs to the complex I 30 kDa subunit family.

Ontologies

Keywords
Biological process	Transport
Cellular component	Chloroplast Membrane Plastid Thylakoid
Ligand	NAD NADP Plastoquinone
Molecular function	Oxidoreductase
PTM	Quinone
Gene Ontology (GO)
Biological process	transport Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	chloroplast thylakoid membrane Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	NADH dehydrogenase (ubiquinone) activity Inferred from electronic annotation. Source: InterPro quinone binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 159	159	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic HAMAP MF_01357		PRO_0000358280

Sequences

	Sequence		Length	Mass (Da)
	A8Y9H3 [UniParc]. Last modified January 15, 2008. Version 1. Checksum: 10BF6A3EF050D4A9	FASTA	159	18,711
	10 20 30 40 50 60 MQQGWLSNWL VKHEVVHRSL GFDHRGIETL QIKAGDWDSI AVILYVYGYN YLRSQCAYDV 70 80 90 100 110 120 APGGSLASVY HLTRIQYGID NPEEVCIKVF AQKDNPRIPS VFWIWRSADF QERESYDMVG 130 140 150 ISYDNHPRLK RILMPESWIG WPLRKDYITP NFYEIQDAH

References

[1]

"An optimized chloroplast DNA extraction protocol for grasses (Poaceae) proves suitable for whole plastid genome sequencing and SNP detection." Diekmann K., Hodkinson T.R., Fricke E., Barth S. PLoS ONE 3:E2813-E2813(2008) [PubMed: 18665252] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Cashel.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM777385 Genomic DNA. Translation: CAO85979.1.
RefSeq	YP_001531286.1. NC_009950.1.
3D structure databases
ProteinModelPortal	A8Y9H3.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5696551.
Phylogenomic databases
ProtClustDB	CHL00012.
Family and domain databases
HAMAP	MF_01357. NDH1_NuoC. [Tree]
InterPro	IPR010218. NADH_DH_suC. IPR001268. NADH_UbQ_OxRdtase_30kDa_su. IPR020396. NADH_UbQ_OxRdtase_CS. [Graphical view]
Pfam	PF00329. Complex1_30kDa. 1 hit. [Graphical view]
ProDom	PD001581. NADH_UbQ_OxRdtase_30kDa_su. 1 hit. [Graphical view] [Entries sharing at least one domain]
PROSITE	PS00542. COMPLEX1_30K. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

NDHJ_LOLPR

Accession

Primary (citable) accession number: A8Y9H3

Entry history

Integrated into UniProtKB/Swiss-Prot:	December 16, 2008
Last sequence update:	January 15, 2008
Last modified:	September 21, 2011
This is version 24 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program