Reviewed, UniProtKB/Swiss-Prot A8Y9H3 (NDHJ_LOLPR)

Names and origin

Protein names

Recommended name:
    NAD(P)H-quinone oxidoreductase subunit J, chloroplastic
    EC=1.6.5.-
Alternative name(s):
    NAD(P)H dehydrogenase subunit J
    NADH-plastoquinone oxidoreductase subunit J

Gene names

Name:	ndhJ
Ordered Locus Names:	LopeCp041

Encoded on

Plastid; Chloroplast

Organism

Lolium perenne (Perennial ryegrass)

Taxonomic identifier

4522 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › BEP clade › Pooideae › Poeae › Loliinae › Lolium

Protein attributes

Sequence length	159 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient By similarity.
Catalytic activity	NAD(P)H + plastoquinone = NAD(P)+ + plastoquinol. HAMAP MF_01357
Subunit structure	NDH is composed of at least 16 different subunits, 5 of which are encoded in the nucleus By similarity.
Subcellular location	Plastid › chloroplast thylakoid membrane; Peripheral membrane protein; Stromal side By similarity.
Sequence similarities	Belongs to the complex I 30 kDa subunit family.

Ontologies

Keywords
Biological process	Transport
Cellular component	Chloroplast Membrane Plastid Thylakoid
Ligand	NAD NADP Plastoquinone
Molecular function	Oxidoreductase
PTM	Quinone
Gene Ontology (GO)
Biological process	oxidation reduction Inferred from electronic annotation. Source: HAMAP photosynthesis, light reaction Inferred from electronic annotation. Source: HAMAP transport Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	chloroplast thylakoid membrane Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	NADH dehydrogenase (ubiquinone) activity Inferred from electronic annotation. Source: InterPro quinone binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 159	159	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic HAMAP MF_01357		PRO_0000358280

Sequences

	Sequence		Length	Mass (Da)
	A8Y9H3-1 [UniParc]. Last modified January 15, 2008. Version 1. Checksum: 10BF6A3EF050D4A9	FASTA	159	18,711
	10 20 30 40 50 60 MQQGWLSNWL VKHEVVHRSL GFDHRGIETL QIKAGDWDSI AVILYVYGYN YLRSQCAYDV 70 80 90 100 110 120 APGGSLASVY HLTRIQYGID NPEEVCIKVF AQKDNPRIPS VFWIWRSADF QERESYDMVG 130 140 150 ISYDNHPRLK RILMPESWIG WPLRKDYITP NFYEIQDAH

References

[1]

"An optimized chloroplast DNA extraction protocol for grasses (Poaceae) proves suitable for whole plastid genome sequencing and SNP detection." Diekmann K., Hodkinson T.R., Fricke E., Barth S. PLoS ONE 3:E2813-E2813(2008) [PubMed: 18665252] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Cashel.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AM777385 Genomic DNA. Translation: CAO85979.1.
RefSeq	YP_001531286.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	5696551.
Family and domain databases
HAMAP	MF_01357. [Tree]
InterPro	IPR001268. NADH_UbQ_OxRdtase_30kDa_su. [Graphical view]
Pfam	PF00329. Complex1_30kDa. 1 hit. [Graphical view]
ProDom	PD001581. Complex1_30K. 1 hit. [Graphical view] [Entries sharing at least one domain]
PROSITE	PS00542. COMPLEX1_30K. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

NDHJ_LOLPR

Accession

Primary (citable) accession number: A8Y9H3

Entry history

Integrated into UniProtKB/Swiss-Prot:	December 16, 2008
Last sequence update:	January 15, 2008
Last modified:	June 16, 2009
This is version 12 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)