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Protein
Submitted name:

Protein CBR-SUP-9

Gene

sup-9

Organism
Caenorhabditis briggsae
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ion channelUniRule annotationSAAS annotation

Keywords - Biological processi

Ion transport, Transport

Names & Taxonomyi

Protein namesi
Submitted name:
Protein CBR-SUP-9Imported
Gene namesi
Name:sup-9Imported
Synonyms:Cbr-sup-9Imported
ORF Names:CBG19563Imported, CBG_19563Imported
OrganismiCaenorhabditis briggsaeImported
Taxonomic identifieri6238 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000008549 Componenti: Chromosome II

Organism-specific databases

WormBaseiCBG19563; CBP29825; WBGene00038758; Cbr-sup-9.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei108 – 12821HelicalSequence analysisAdd
BLAST
Transmembranei158 – 17720HelicalSequence analysisAdd
BLAST
Transmembranei189 – 20719HelicalSequence analysisAdd
BLAST
Transmembranei219 – 24628HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2323Sequence analysisAdd
BLAST
Chaini24 – 325302Sequence analysisPRO_5002731099Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi6238.CBG19563.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini64 – 13269Ion_trans_2InterPro annotationAdd
BLAST
Domaini168 – 24578Ion_trans_2InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. [View classification]UniRule annotation

Keywords - Domaini

SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Phylogenomic databases

eggNOGiKOG4404. Eukaryota.
ENOG410XRZJ. LUCA.
InParanoidiA8XVW8.
OMAiNNDAENQ.
OrthoDBiEOG7B05DC.

Family and domain databases

InterProiIPR003280. 2pore_dom_K_chnl.
IPR003092. 2pore_dom_K_chnl_TASK.
IPR013099. K_chnl_dom.
[Graphical view]
PfamiPF07885. Ion_trans_2. 2 hits.
[Graphical view]
PIRSFiPIRSF038061. K_channel_subfamily_K_type. 1 hit.
PRINTSiPR01333. 2POREKCHANEL.
PR01095. TASKCHANNEL.

Sequencei

Sequence statusi: Complete.

A8XVW8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKRQNIRTLS LIVCTLTYLL VGAAVFDALE TENEILQRKL VARVREKLKT
60 70 80 90 100
KYNMSNADYE ILEATIVKSV PHKAGYQWKF SGAFYFATTV ITTIGYGHST
110 120 130 140 150
PMTDAGKVFC MLYALAGIPL GLIMFQSIGE RMNTFAAKLL RFIRKAAGKP
160 170 180 190 200
AVVTSSDLIV FCTGWGGLLI FGGAFMFSSY ENWTYFDAVY YCFVTLTTIG
210 220 230 240 250
FGDYVALQKR GSLQTQPEYV FFSLVFILFG LTVISAAMNL LVLRFLTMNT
260 270 280 290 300
EDERRDEQEA ILAAQGLVRV GDPSCDDDFG RLPLSDNVSL ASCSCYQLPD
310 320
EKLRHRHRKN NIHTHEHGGG TGDFS
Length:325
Mass (Da):36,321
Last modified:December 16, 2008 - v2
Checksum:i7EEF485FD20DE70D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HE601321 Genomic DNA. Translation: CAP36787.2.

Genome annotation databases

EnsemblMetazoaiCBG19563; CBG19563; CBG19563.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HE601321 Genomic DNA. Translation: CAP36787.2.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6238.CBG19563.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiCBG19563; CBG19563; CBG19563.

Organism-specific databases

WormBaseiCBG19563; CBP29825; WBGene00038758; Cbr-sup-9.

Phylogenomic databases

eggNOGiKOG4404. Eukaryota.
ENOG410XRZJ. LUCA.
InParanoidiA8XVW8.
OMAiNNDAENQ.
OrthoDBiEOG7B05DC.

Family and domain databases

InterProiIPR003280. 2pore_dom_K_chnl.
IPR003092. 2pore_dom_K_chnl_TASK.
IPR013099. K_chnl_dom.
[Graphical view]
PfamiPF07885. Ion_trans_2. 2 hits.
[Graphical view]
PIRSFiPIRSF038061. K_channel_subfamily_K_type. 1 hit.
PRINTSiPR01333. 2POREKCHANEL.
PR01095. TASKCHANNEL.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: AF16Imported.

Entry informationi

Entry nameiA8XVW8_CAEBR
AccessioniPrimary (citable) accession number: A8XVW8
Entry historyi
Integrated into UniProtKB/TrEMBL: January 15, 2008
Last sequence update: December 16, 2008
Last modified: May 11, 2016
This is version 55 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.