A8XMQ1 (A8XMQ1_CAEBR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Protein CBR-UNC-25 EMBL CAP33927.1

Gene names

Name:	unc-25 WormBase CBG15755
Synonyms:	Cbr-unc-25 EMBL CAP33927.1, cbr-unc-25 WormBase CBG15755
ORF Names:	CBG15755 WormBase CBG15755, CBG_15755 EMBL CAP33927.1

Organism

Caenorhabditis briggsae [Reference proteome] EMBL CAP33927.1

Taxonomic identifier

6238 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Protostomia › Ecdysozoa › Nematoda › Chromadorea › Rhabditida › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis

Protein attributes

Sequence length	510 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000382
Sequence similarities	Belongs to the group II decarboxylase family. RuleBase RU000382
Caution	The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000382
Molecular function	Lyase RuleBase RU000382
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	carboxylic acid metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	carboxy-lyase activity Inferred from electronic annotation. Source: InterPro pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A8XMQ1 [UniParc]. Last modified January 15, 2008. Version 1. Checksum: 5A33BC26003391EE	FASTA	510	58,030
	10 20 30 40 50 60 MSSPVKDEQS DAMLEALIAK EILPQSGNWE GTEEFLNRVV QVLLKYIKDQ NDRDQKILEF 70 80 90 100 110 120 HHPDKMQMLI DLSIPEQPEN LLKLVKSCED VLRLGVRTGH PRFFNQISCG LDLVSMAGEW 130 140 150 160 170 180 LTATANTNMF TYEIAPVFIL MEKSVMTRMW EAVGWDPEKA DGIFAPGGAI ANLYAMNAAR 190 200 210 220 230 240 HQLWPRSKHL GMKDIPTLCC FTSEDESHYS IKSASAVLGI GADHCFNIPT DKNGKMIPEA 250 260 270 280 290 300 LEAKIIESKK EGLTPFFVCC TAGTTVYGAF DPLERVANIC ERHKLWFHVD AAWGGGMLLS 310 320 330 340 350 360 PEHRYKLAGV ERANSVTWNP HKLMGALLQC SACLFRQDGL LFQCNQASAD YLFQQDKPYD 370 380 390 400 410 420 VSYDTGDKAI QCGRHNDVFK LWLMWKSKGM EGYRQQINKL MDLSAYFTRR IKETEGFELI 430 440 450 460 470 480 IENPEFLNIC FWYVPSKIRN LEPAEIKARL EKIAPKIKAG MMQRGTTMVG YQPDKQRPNF 490 500 510 FRMIISNQAI TREDLDFLIK EIVDIGESLE

References

[1]

"The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics." Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A., D'Eustachio P., Fitch D.H.A., Fulton L.A., Fulton R.E., Griffiths-Jones S., Harris T.W., Hillier L.W. , Kamath R., Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P., Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M., Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K., Durbin R.M., Waterston R.H. PLoS Biol. 1:166-192(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: AF16 EMBL CAP33927.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	HE600979 Genomic DNA. Translation: CAP33927.1.
RefSeq	XP_002640864.1. XM_002640818.1.
3D structure databases
ProteinModelPortal	A8XMQ1.
SMR	A8XMQ1. Positions 14-507.
ModBase	Search...
Protein-protein interaction databases
STRING	6238.CBG15755.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblMetazoa	CBG15755; CBG15755; CBG15755.
GeneID	8582858.
KEGG	cbr:CBG15755.
Organism-specific databases
CTD	8582858.
WormBase	CBG15755; CBP03839; WBGene00035897; Cbr-unc-25.
Phylogenomic databases
eggNOG	COG0076.
HOGENOM	HOG000005382.
KO	K01580.
OMA	HKQALFC.
Family and domain databases
Gene3D	3.40.640.10. 1 hit. 3.90.1150.10. 1 hit.
InterPro	IPR002129. PyrdxlP-dep_de-COase. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
Pfam	PF00282. Pyridoxal_deC. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A8XMQ1_CAEBR

Accession

Primary (citable) accession number: A8XMQ1

Entry history

Integrated into UniProtKB/TrEMBL:	January 15, 2008
Last sequence update:	January 15, 2008
Last modified:	April 3, 2013
This is version 44 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)