A8XA17 (A8XA17_CAEBR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Protein CBR-GPDH-2 EMBL CAP29482.1

Gene names

Name:	gpdh-2 WormBase CBG09958
Synonyms:	Cbr-gpdh-2 EMBL CAP29482.1, cbr-gpdh-2 WormBase CBG09958
ORF Names:	CBG09958 WormBase CBG09958, CBG_09958 EMBL CAP29482.1

Organism

Caenorhabditis briggsae [Reference proteome] EMBL CAP29482.1

Taxonomic identifier

6238 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Protostomia › Ecdysozoa › Nematoda › Chromadorea › Rhabditida › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis

Protein attributes

Sequence length	353 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities	Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. RuleBase RU000437
Caution	The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

Ontologies

Keywords
Ligand	NAD RuleBase RU000437
Molecular function	Oxidoreductase RuleBase RU000437
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro glycerol-3-phosphate catabolic process Inferred from electronic annotation. Source: InterPro
Cellular_component	glycerol-3-phosphate dehydrogenase complex Inferred from electronic annotation. Source: InterPro
Molecular_function	NAD binding Inferred from electronic annotation. Source: InterPro glycerol-3-phosphate dehydrogenase [NAD+] activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A8XA17 [UniParc]. Last modified January 15, 2008. Version 1. Checksum: 0EAB0D53A386CF45	FASTA	353	38,467
	10 20 30 40 50 60 MSPKKVTIIG SGNWGSAIAR IVGNTTKSFP DQFDPQVRMY VYEEIVNGEK LSEVINTRHE 70 80 90 100 110 120 NIKYLPGKIL PENVVAVTDL VKSCEGSNIL IFVVPHQFVK GLCEKLVGKI PADTQAISLI 130 140 150 160 170 180 KGVSTGGIER GGLKLISEEI KEILKIEVSV LMGANLAPEV ANDNFCEATI GCKRKAEDGP 190 200 210 220 230 240 LLKKLFHTDN FRINVVEDAH TVELCGALKN VVACAAGFTD GLGYGDNTKA AVIRLGLMET 250 260 270 280 290 300 TKFVEHYYPG SNLETFFESC GIADLITTCY GGRNRKVCEA FVKTGKTLAE VEKELLNGQS 310 320 330 340 350 AQGPLTAEEV YLMMKKTGLD AKFPLFTAVH KICAGEMKPA ELVDCLRNHP EHM

References

[1]

"The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics." Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A., D'Eustachio P., Fitch D.H.A., Fulton L.A., Fulton R.E., Griffiths-Jones S., Harris T.W., Hillier L.W. , Kamath R., Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P., Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M., Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K., Durbin R.M., Waterston R.H. PLoS Biol. 1:166-192(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: AF16 EMBL CAP29482.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	HE601459 Genomic DNA. Translation: CAP29482.1.
RefSeq	XP_002641636.1. XM_002641590.1.
3D structure databases
ProteinModelPortal	A8XA17.
SMR	A8XA17. Positions 1-353.
ModBase	Search...
Protein-protein interaction databases
STRING	6238.CBG09958.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblMetazoa	CBG09958; CBG09958; CBG09958.
GeneID	8583627.
KEGG	cbr:CBG09958.
Organism-specific databases
CTD	8583627.
WormBase	CBG09958; CBP02434; WBGene00031452; Cbr-gpdh-2.
Phylogenomic databases
eggNOG	COG0240.
HOGENOM	HOG000246855.
KO	K00006.
OMA	PVGEFIH.
Family and domain databases
Gene3D	1.10.1040.10. 1 hit. 3.40.50.720. 1 hit.
InterPro	IPR008927. 6-PGluconate_DH_C-like. IPR013328. DH_multihelical. IPR006168. G3P_DH_NAD-dep. IPR006109. G3P_DH_NAD-dep_C. IPR017751. G3P_DH_NAD-dep_euk. IPR011128. G3P_DH_NAD-dep_N. IPR016040. NAD(P)-bd_dom. [Graphical view]
PANTHER	PTHR11728. PTHR11728. 1 hit.
Pfam	PF07479. NAD_Gly3P_dh_C. 1 hit. PF01210. NAD_Gly3P_dh_N. 1 hit. [Graphical view]
PIRSF	PIRSF000114. Glycerol-3-P_dh. 1 hit.
PRINTS	PR00077. GPDHDRGNASE.
SUPFAM	SSF48179. 6DGDH_C_like. 1 hit.
TIGRFAMs	TIGR03376. glycerol3P_DH. 1 hit.
PROSITE	PS00957. NAD_G3PDH. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A8XA17_CAEBR

Accession

Primary (citable) accession number: A8XA17

Entry history

Integrated into UniProtKB/TrEMBL:	January 15, 2008
Last sequence update:	January 15, 2008
Last modified:	April 3, 2013
This is version 49 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)