A8WK25 (A8WK25_CAEBR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
CBR-PSD-1 protein EMBL CAP20818.1

Gene names

Name:	psd-1 WormBase CBG24141
Synonyms:	Cbr-psd-1 EMBL CAP20818.1, cbr-psd-1 WormBase CBG24141
ORF Names:	CBG24141 WormBase CBG24141, CBG_24141 EMBL CAP20818.1

Organism

Caenorhabditis briggsae

Taxonomic identifier

6238 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Nematoda › Chromadorea › Rhabditida › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis

Protein attributes

Sequence length	348 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data. EMBL CAP20818.1

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	phospholipid biosynthetic process Inferred from electronic annotation. Source: InterPro
Molecular function	phosphatidylserine decarboxylase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A8WK25 [UniParc]. Last modified January 15, 2008. Version 1. Checksum: DB52B85B25A26E2B	FASTA	348	39,295
	10 20 30 40 50 60 MLDIYSGGFL HPDSVMSINP FLLVVAVWSW LKWLSLSTLI IGGGAYIGYL FTPDWREIVD 70 80 90 100 110 120 SKHYYSNWKI RVYLSLPFNT ASRVIGGLAN QEIPVWLREY LLGGFARMYD CRMEECVDPD 130 140 150 160 170 180 FNNYPSFAAF FNRKLRESTR PISASPLVSP ADGTVLHFGK VEENKIEYVK GHDYDVDKFL 190 200 210 220 230 240 GNVELPEKEE LDLYQVVIYL APGDYHAFHS PARWVANQCR HVPGLLLSVR PTLLSHVPHL 250 260 270 280 290 300 FCLNERVVLN GSWRHGFFSM SAVAATNVGD IVVDAEPSLR TNIVRRKTQK IMNTETEIHA 310 320 330 340 PYLPGERVGE FRLGSTIVLV FQAPPTIKFA IKAGDPLRYG QSLVADGV

References

[1]

"The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics." Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A., D'Eustachio P., Fitch D.H.A., Fulton L.A., Fulton R.E., Griffiths-Jones S., Harris T.W., Hillier L.W. , Kamath R., Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P., Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M., Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K., Durbin R.M., Waterston R.H. PLoS Biol. 1:166-192(2003) [PubMed: 14624247] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: AF16.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CAAC02000102 Genomic DNA. Translation: CAP20818.1.
RefSeq	XP_002643175.1. XM_002643129.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	A8WK25.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	8585169.
KEGG	cbr:CBG24141.
Organism-specific databases
CTD	8585169.
WormBase	CBG24141; CBP12763; WBGene00042321; Cbr-psd-1.
Phylogenomic databases
HOGENOM	HBG395511.
OMA	MCQSEAR.
PhylomeDB	A8WK25.
Family and domain databases
InterPro	IPR003817. PS_Dcarbxylase. IPR005221. PS_decarb. [Graphical view]
KO	K01613.
PANTHER	PTHR10067. PS_decarb. 1 hit.
Pfam	PF02666. PS_Dcarbxylase. 1 hit. [Graphical view]
TIGRFAMs	TIGR00163. PS_decarb. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A8WK25_CAEBR

Accession

Primary (citable) accession number: A8WK25

Entry history

Integrated into UniProtKB/TrEMBL:	January 15, 2008
Last sequence update:	January 15, 2008
Last modified:	November 16, 2011
This is version 30 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)